PabI
(in Bio.Restriction.Restriction) |
Parser
(in Bio.Phylo.NewickIO) |
position
(in BeforePosition) |
Pac19842II
(in Bio.Restriction.Restriction) |
Parser
(in Bio.Phylo.PhyloXMLIO) |
position
(in BetweenPosition) |
PacI
(in Bio.Restriction.Restriction) |
Parser
(in Bio.SeqIO.UniprotIO) |
position
(in ExactPosition) |
PacIII
(in Bio.Restriction.Restriction) |
ParserError
(in Bio.Affy.CelFile) |
position
(in OneOfPosition) |
PaeI
(in Bio.Restriction.Restriction) |
ParserFailureError |
position
(in UnknownPosition) |
PaeR7I
(in Bio.Restriction.Restriction) |
ParserSupport
(in Bio.SearchIO._legacy) |
position
(in WithinPosition) |
page_sizes()
(in Bio.Graphics.GenomeDiagram._AbstractDrawer) |
ParsimonyScorer
(in Bio.Phylo.TreeConstruction) |
POSITION_PADDING
(in EmblWriter) |
PagI
(in Bio.Restriction.Restriction) |
ParsimonyTreeConstructor
(in Bio.Phylo.TreeConstruction) |
PositionGap
(in Bio.SeqFeature) |
PairedFastaQualIterator()
(in Bio.SeqIO.QualityIO) |
parts
(in FeatureLocation) |
PositionSpecificScoringMatrix
(in Bio.motifs.matrix) |
pairwise2
(in Bio) |
PasI
(in Bio.Restriction.Restriction) |
PositionWeightMatrix
(in Bio.motifs.matrix) |
PairwiseAligner
(in Bio.Align) |
Pathway
(in Bio.KEGG.KGML.KGML_pathway) |
positive_pKs
(in Bio.SeqUtils.IsoelectricPoint) |
PairwiseAlignment
(in Bio.Align) |
Pathway
(in Bio) |
posted_date()
(in _DatabaseReportConsumer) |
PairwiseAlignments
(in Bio.Align) |
PauI
(in Bio.Restriction.Restriction) |
PPBuilder
(in Bio.PDB.Polypeptide) |
Pal408I
(in Bio.Restriction.Restriction) |
Pba2294I
(in Bio.Restriction.Restriction) |
PpiI
(in Bio.Restriction.Restriction) |
PalAI
(in Bio.Restriction.Restriction) |
PC5
(in Bio.Alphabet.Reduced) |
PpiP13II
(in Bio.Restriction.Restriction) |
PalindromeCommandline
(in Bio.Emboss.Applications) |
pc5
(in Bio.Alphabet.Reduced) |
PpsI
(in Bio.Restriction.Restriction) |
Palindromic
(in Bio.Restriction.Restriction) |
pc_5_table
(in Bio.Alphabet.Reduced) |
Ppu10I
(in Bio.Restriction.Restriction) |
pam120
(in Bio.SubsMat.MatrixInfo) |
pca()
(in Bio.Cluster._cluster) |
Ppu21I
(in Bio.Restriction.Restriction) |
pam180
(in Bio.SubsMat.MatrixInfo) |
pca()
(in Bio.Cluster) |
PpuMI
(in Bio.Restriction.Restriction) |
pam250
(in Bio.SubsMat.MatrixInfo) |
PcaII
(in Bio.Restriction.Restriction) |
PrankCommandline
(in Bio.Align.Applications._Prank) |
pam30
(in Bio.SubsMat.MatrixInfo) |
pcb_vectors_pymol()
(in HSExposureCA) |
PRECISION_BRANCHLENGTH
(in Bio.Nexus.Trees) |
pam300
(in Bio.SubsMat.MatrixInfo) |
PceI
(in Bio.Restriction.Restriction) |
PRECISION_SUPPORT
(in Bio.Nexus.Trees) |
pam60
(in Bio.SubsMat.MatrixInfo) |
PciI
(in Bio.Restriction.Restriction) |
predictNOE()
(in Bio.NMR.NOEtools) |
pam90
(in Bio.SubsMat.MatrixInfo) |
PciSI
(in Bio.Restriction.Restriction) |
prefix
(in Bio.Phylo.NeXMLIO) |
PAML
(in Bio.Phylo) |
Pcr308II
(in Bio.Restriction.Restriction) |
prefix
(in Bio.Phylo.PhyloXMLIO) |
Paml
(in Bio.Phylo.PAML._paml) |
PcsI
(in Bio.Restriction.Restriction) |
prefixes
(in Writer) |
PamlError
(in Bio.Phylo.PAML._paml) |
PctI
(in Bio.Restriction.Restriction) |
PrefWidth
(in PrintFormat) |
parameters
(in AbstractCommandline) |
PDB
(in Bio) |
pretty_print_prediction()
(in Bio.HMM.Utilities) |
Parameters
(in Bio.Blast.Record) |
pdb()
(in FSSPAlignDict) |
primary()
(in _RecordConsumer) |
parent_edges()
(in Graph) |
PDB_REF
(in PDBList) |
primary_ref_line()
(in _RecordConsumer) |
parent_edges()
(in MultiGraph) |
pdb_res_num
(in align) |
Primer3
(in Bio.Emboss) |
parents()
(in Graph) |
PdbAtomIterator()
(in Bio.SeqIO.PdbIO) |
Primer3Commandline
(in Bio.Emboss.Applications) |
parents()
(in MultiGraph) |
PDBConstructionException
(in Bio.PDB.PDBExceptions) |
Primers
(in Bio.Emboss.Primer3) |
parse()
(in Bio.AlignIO) |
PDBConstructionWarning
(in Bio.PDB.PDBExceptions) |
PrimerSearch
(in Bio.Emboss) |
parse()
(in Bio.Blast.NCBIXML) |
PDBException
(in Bio.PDB.PDBExceptions) |
PrimerSearchCommandline
(in Bio.Emboss.Applications) |
parse()
(in Bio.Compass) |
PDBExceptions
(in Bio.PDB) |
print_as()
(in PrintFormat) |
parse()
(in Bio.Emboss.Primer3) |
PDBIO
(in Bio.PDB.PDBIO') |
print_full_mat()
(in SeqMat) |
parse()
(in DataHandler) |
PdbIO
(in Bio.SeqIO) |
print_index()
(in CodonAdaptationIndex) |
parse()
(in Bio.Entrez) |
PDBIO'
(in Bio.PDB) |
print_info_content()
(in Bio.Align.AlignInfo) |
parse()
(in Bio.ExPASy.Enzyme) |
PDBList
(in Bio.PDB.PDBList') |
print_mat()
(in SeqMat) |
parse()
(in Bio.ExPASy.Prodoc) |
PDBList'
(in Bio.PDB) |
print_matrix()
(in Bio.pairwise2) |
parse()
(in Bio.ExPASy.Prosite) |
PDBParser
(in Bio.PDB.PDBParser') |
print_options()
(in Paml) |
parse()
(in Bio.ExPASy.cellosaurus) |
PDBParser'
(in Bio.PDB) |
print_options()
(in Codeml) |
parse()
(in FeatureParser) |
PdbSeqresIterator()
(in Bio.SeqIO.PdbIO) |
print_that()
(in PrintFormat) |
parse()
(in RecordParser) |
PDBX_POLY_SEQ_SCHEME_FIELDS
(in Bio.SeqIO.PdbIO) |
print_that()
(in Analysis) |
parse()
(in InsdcScanner) |
Pdi8503III
(in Bio.Restriction.Restriction) |
PrintFormat
(in Bio.Restriction) |
parse()
(in Bio.Geo) |
PdiI
(in Bio.Restriction.Restriction) |
PrintFormat
(in Bio.Restriction.PrintFormat) |
parse()
(in Bio.KEGG.Compound) |
PdmI
(in Bio.Restriction.Restriction) |
ProbconsCommandline
(in Bio.Align.Applications._Probcons) |
parse()
(in Bio.KEGG.Enzyme) |
Pdu1735I
(in Bio.Restriction.Restriction) |
process_asa_data()
(in Bio.PDB.NACCESS) |
parse()
(in Bio.KEGG.Gene) |
Peaklist
(in Bio.NMR.xpktools) |
process_clade()
(in Writer) |
parse()
(in KGMLParser) |
peek()
(in CharBuffer) |
process_clade()
(in Parser) |
parse()
(in Bio.KEGG.KGML.KGML_parser) |
peek_nonwhitespace()
(in CharBuffer) |
process_rsa_data()
(in Bio.PDB.NACCESS) |
parse()
(in Bio.KEGG.Map) |
peek_word()
(in CharBuffer) |
Prodoc
(in Bio.ExPASy) |
parse()
(in Bio.Medline) |
peekline()
(in UndoHandle) |
products
(in Reaction) |
parse()
(in Parser) |
PenI
(in Bio.Restriction.Restriction) |
project()
(in _FeatureConsumer) |
parse()
(in Bio.Phylo.CDAOIO) |
pfam_gc_mapping
(in StockholmIterator) |
project()
(in _RecordConsumer) |
parse()
(in Parser) |
pfam_gc_mapping
(in StockholmWriter) |
Property
(in Bio.Phylo.PhyloXML) |
parse()
(in Bio.Phylo.NeXMLIO) |
pfam_gr_mapping
(in StockholmIterator) |
property()
(in Parser) |
parse()
(in Parser) |
pfam_gr_mapping
(in StockholmWriter) |
property()
(in Writer) |
parse()
(in Bio.Phylo.NewickIO) |
pfam_gs_mapping
(in StockholmIterator) |
Prosite
(in Bio.ExPASy) |
parse()
(in Bio.Phylo.NexusIO) |
pfam_gs_mapping
(in StockholmWriter) |
protein
(in Bio.Alphabet.IUPAC) |
parse()
(in Parser) |
PfeI
(in Bio.Restriction.Restriction) |
Protein20Random
(in Bio.Align.AlignInfo) |
parse()
(in Bio.Phylo.PhyloXMLIO) |
Pfl1108I
(in Bio.Restriction.Restriction) |
protein_alphabet
(in CodonTable) |
parse()
(in Bio.Phylo._io) |
Pfl23II
(in Bio.Restriction.Restriction) |
protein_alphabet
(in NCBICodonTable) |
parse()
(in Bio.SCOP.Cla) |
Pfl8569I
(in Bio.Restriction.Restriction) |
protein_alphabet
(in DistanceCalculator) |
parse()
(in Bio.SCOP.Des) |
PflFI
(in Bio.Restriction.Restriction) |
protein_letters
(in Bio.Data.IUPACData) |
parse()
(in Bio.SCOP.Dom) |
PflMI
(in Bio.Restriction.Restriction) |
protein_letters_1to3
(in Bio.Data.IUPACData) |
parse()
(in Bio.SCOP.Hie) |
PflPt14I
(in Bio.Restriction.Restriction) |
protein_letters_1to3_extended
(in Bio.Data.IUPACData) |
parse()
(in Bio.SCOP.Raf) |
pfm
(in Bio.motifs) |
protein_letters_3to1
(in Bio.Data.IUPACData) |
parse()
(in BlastErrorParser) |
PfoI
(in Bio.Restriction.Restriction) |
protein_letters_3to1
(in Bio.Data.SCOPData) |
parse()
(in BlastParser) |
PfrJS12IV
(in Bio.Restriction.Restriction) |
protein_letters_3to1_extended
(in Bio.Data.IUPACData) |
parse()
(in PSIBlastParser) |
PfrJS12V
(in Bio.Restriction.Restriction) |
protein_matrices
(in DistanceCalculator) |
parse()
(in AbstractParser) |
PfrJS15III
(in Bio.Restriction.Restriction) |
protein_models
(in DistanceCalculator) |
parse()
(in Bio.SearchIO) |
Pgdb_dbutils
(in BioSQL.DBUtils) |
protein_scale()
(in ProteinAnalysis) |
parse()
(in Parser) |
Phd
(in Bio.Sequencing) |
protein_weight_ranges
(in Bio.Data.IUPACData) |
parse()
(in Bio.SeqIO) |
PhdIO
(in Bio.SeqIO) |
protein_weights
(in Bio.Data.IUPACData) |
parse()
(in Bio.Sequencing.Ace) |
PhdIterator()
(in Bio.SeqIO.PhdIO) |
ProteinAlphabet
(in Bio.Alphabet) |
parse()
(in Bio.Sequencing.Phd) |
PhdWriter
(in Bio.SeqIO.PhdIO) |
ProteinAnalysis
(in Bio.SeqUtils.ProtParam) |
parse()
(in Bio.SwissProt.KeyWList) |
phen_micro
(in Bio.phenotype) |
ProteinDomain
(in Bio.Phylo.PhyloXML) |
parse()
(in Bio.SwissProt) |
phenotype
(in Bio) |
ProtParam
(in Bio.SeqUtils) |
parse()
(in Bio.UniGene) |
phred_quality_from_solexa()
(in Bio.SeqIO.QualityIO) |
ProtParamData
(in Bio.SeqUtils) |
parse()
(in Bio.Wise.psw) |
PhylipIO
(in Bio.AlignIO) |
ProtsimLine
(in Bio.UniGene) |
parse()
(in Bio.motifs) |
PhylipIterator
(in Bio.AlignIO.PhylipIO) |
prune()
(in Tree) |
parse()
(in Bio.phenotype) |
PhylipWriter
(in Bio.AlignIO.PhylipIO) |
prune()
(in TreeMixin) |
parse_alignment_block()
(in _BaseExonerateParser) |
Phylo
(in Bio) |
PscI
(in Bio.Restriction.Restriction) |
parse_alignment_block()
(in ExonerateCigarParser) |
PhyloElement
(in Bio.Phylo.PhyloXML) |
Pse18267I
(in Bio.Restriction.Restriction) |
parse_alignment_block()
(in ExonerateTextParser) |
Phylogeny
(in Bio.Phylo.PhyloXML) |
PSEA
(in Bio.PDB) |
parse_alignment_block()
(in ExonerateVulgarParser) |
phylogeny()
(in Writer) |
PSEA
(in Bio.PDB.PSEA) |
parse_basics()
(in Bio.Phylo.PAML._parse_baseml) |
PhyloXML
(in Bio.Phylo) |
psea()
(in Bio.PDB.PSEA) |
parse_basics()
(in Bio.Phylo.PAML._parse_codeml) |
Phyloxml
(in Bio.Phylo.PhyloXML) |
psea2HEC()
(in Bio.PDB.PSEA) |
parse_branch_site_a()
(in Bio.Phylo.PAML._parse_codeml) |
phyloxml()
(in Writer) |
pseudocounts
(in Motif) |
parse_cds_features()
(in InsdcScanner) |
PhyloXMLError
(in Bio.Phylo.PhyloXMLIO) |
PshAI
(in Bio.Restriction.Restriction) |
parse_children()
(in Parser) |
PhyloXMLIO
(in Bio.Phylo) |
PshBI
(in Bio.Restriction.Restriction) |
parse_clademodelc()
(in Bio.Phylo.PAML._parse_codeml) |
PhyloXMLWarning
(in Bio.Phylo.PhyloXML) |
PSIBlast
(in Bio.Blast.Record) |
parse_distances()
(in Bio.Phylo.PAML._parse_codeml) |
PhymlCommandline
(in Bio.Phylo.Applications._Phyml) |
PSIBlastParser
(in Bio.SearchIO._legacy.NCBIStandalone) |
parse_domain()
(in Bio.SCOP) |
pi()
(in IsoelectricPoint) |
PsiI
(in Bio.Restriction.Restriction) |
parse_feature()
(in InsdcScanner) |
pid()
(in _FeatureConsumer) |
Psp0357II
(in Bio.Restriction.Restriction) |
parse_features()
(in InsdcScanner) |
pid()
(in _RecordConsumer) |
Psp03I
(in Bio.Restriction.Restriction) |
parse_features()
(in _ImgtScanner) |
Pin17FIII
(in Bio.Restriction.Restriction) |
Psp124BI
(in Bio.Restriction.Restriction) |
parse_file()
(in AbstractParser) |
PinAI
(in Bio.Restriction.Restriction) |
Psp1406I
(in Bio.Restriction.Restriction) |
parse_footer()
(in EmblScanner) |
PinP23II
(in Bio.Restriction.Restriction) |
Psp5II
(in Bio.Restriction.Restriction) |
parse_footer()
(in GenBankScanner) |
PinP59III
(in Bio.Restriction.Restriction) |
Psp6I
(in Bio.Restriction.Restriction) |
parse_footer()
(in InsdcScanner) |
PirIO
(in Bio.SeqIO) |
PspCI
(in Bio.Restriction.Restriction) |
parse_freqs()
(in Bio.Phylo.PAML._parse_baseml) |
PirIterator()
(in Bio.SeqIO.PirIO) |
PspEI
(in Bio.Restriction.Restriction) |
parse_graph()
(in Parser) |
PirWriter
(in Bio.SeqIO.PirIO) |
PspFI
(in Bio.Restriction.Restriction) |
parse_handle_to_graph()
(in Parser) |
pKcterminal
(in Bio.SeqUtils.IsoelectricPoint) |
PspGI
(in Bio.Restriction.Restriction) |
parse_header()
(in InsdcScanner) |
pKnterminal
(in Bio.SeqUtils.IsoelectricPoint) |
PspLI
(in Bio.Restriction.Restriction) |
parse_hits()
(in Hmmer2TextParser) |
PkrI
(in Bio.Restriction.Restriction) |
PspN4I
(in Bio.Restriction.Restriction) |
parse_hsp_alignments()
(in Hmmer2TextParser) |
PlaDI
(in Bio.Restriction.Restriction) |
PspOMI
(in Bio.Restriction.Restriction) |
parse_hsps()
(in Hmmer2TextParser) |
PlateRecord
(in Bio.phenotype.phen_micro) |
PspOMII
(in Bio.Restriction.Restriction) |
parse_kappas()
(in Bio.Phylo.PAML._parse_baseml) |
Ple19I
(in Bio.Restriction.Restriction) |
PspPI
(in Bio.Restriction.Restriction) |
parse_key_value()
(in Hmmer2TextParser) |
PleI
(in Bio.Restriction.Restriction) |
PspPPI
(in Bio.Restriction.Restriction) |
parse_line()
(in Bio.Wise.psw) |
PliMI
(in Bio.Restriction.Restriction) |
PspPRI
(in Bio.Restriction.Restriction) |
parse_model()
(in Bio.Phylo.PAML._parse_codeml) |
PluTI
(in Bio.Restriction.Restriction) |
PspXI
(in Bio.Restriction.Restriction) |
parse_ng86()
(in Bio.Phylo.PAML._parse_yn00) |
pm_fitting
(in Bio.phenotype) |
PsrI
(in Bio.Restriction.Restriction) |
parse_nssites()
(in Bio.Phylo.PAML._parse_codeml) |
PmaCI
(in Bio.Restriction.Restriction) |
PssI
(in Bio.Restriction.Restriction) |
parse_others()
(in Bio.Phylo.PAML._parse_yn00) |
PmeI
(in Bio.Restriction.Restriction) |
PSSM
(in Bio.Align.AlignInfo) |
parse_pairwise()
(in Bio.Phylo.PAML._parse_codeml) |
PmlI
(in Bio.Restriction.Restriction) |
pssm
(in Motif) |
parse_parameter_list()
(in Bio.Phylo.PAML._parse_baseml) |
Point
(in Bio.Phylo.PhyloXML) |
Pst14472I
(in Bio.Restriction.Restriction) |
parse_parameters()
(in Bio.Phylo.PAML._parse_baseml) |
point()
(in Parser) |
Pst145I
(in Bio.Restriction.Restriction) |
parse_pdb_header'
(in Bio.PDB) |
point()
(in Writer) |
Pst273I
(in Bio.Restriction.Restriction) |
parse_pdb_header()
(in Bio.PDB.parse_pdb_header') |
Polygon
(in Bio.Phylo.PhyloXML) |
PstI
(in Bio.Restriction.Restriction) |
parse_preamble()
(in Hmmer2TextParser) |
polygon()
(in Parser) |
PstNI
(in Bio.Restriction.Restriction) |
parse_qresult()
(in Hmmer2TextParser) |
polygon()
(in Writer) |
PsuGI
(in Bio.Restriction.Restriction) |
parse_rates()
(in Bio.Phylo.PAML._parse_baseml) |
Polypeptide
(in Bio.PDB) |
PsuI
(in Bio.Restriction.Restriction) |
parse_records()
(in InsdcScanner) |
Polypeptide
(in Bio.PDB.Polypeptide) |
psw
(in Bio.Wise) |
parse_siteclass_omegas()
(in Bio.Phylo.PAML._parse_codeml) |
pop()
(in _IndexedSeqFileDict) |
Psycopg2_dbutils
(in BioSQL.DBUtils) |
parse_siteclass_proportions()
(in Bio.Phylo.PAML._parse_codeml) |
pop()
(in Hit) |
PsyI
(in Bio.Restriction.Restriction) |
parse_str()
(in AbstractParser) |
pop()
(in QueryResult) |
PteI
(in Bio.Restriction.Restriction) |
parse_vulgar_comp()
(in Bio.SearchIO.ExonerateIO.exonerate_vulgar) |
pop()
(in MutableSeq) |
pubmed_id()
(in _FeatureConsumer) |
parse_xsd()
(in DataHandler) |
PopGen
(in Bio) |
pubmed_id()
(in _RecordConsumer) |
parse_yn00()
(in Bio.Phylo.PAML._parse_yn00) |
popitem()
(in Crystal) |
PUNCTUATION
(in Bio.Nexus.Nexus) |
ParseBlastTable
(in Bio.Blast) |
popitem()
(in _IndexedSeqFileDict) |
push_back()
(in Hmmer2TextParser) |
Parser
(in Bio.Entrez) |
pos_align_list2dict()
(in FSSPAlignRec) |
PvuI
(in Bio.Restriction.Restriction) |
Parser
(in Bio.ExPASy.ScanProsite) |
pos_specific_score_matrix()
(in SummaryInfo) |
PvuII
(in Bio.Restriction.Restriction) |
Parser
(in Bio.Phylo.CDAOIO) |
PosAlign
(in Bio.FSSP) |
pwm
(in Motif) |
Parser
(in Bio.Phylo.NeXMLIO) |
position
(in AfterPosition) |
|