Package Bio :: Package Cluster
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Package Cluster

source code

Cluster Analysis.

The Bio.Cluster provides commonly used clustering algorithms and was designed with the application to gene expression data in mind. However, this module can also be used for cluster analysis of other types of data.

Bio.Cluster and the underlying C Clustering Library is described in M. De Hoon et al. (2004) http://dx.doi.org/10.1093/bioinformatics/bth078

Submodules [hide private]

Classes [hide private]
  Record
Store gene expression data.
Functions [hide private]
 
_treesort(order, nodeorder, nodecounts, tree) source code
 
_savetree(jobname, tree, order, transpose) source code
 
read(handle)
Read gene expression data from the file handle and return a Record.
source code
Variables [hide private]
  __package__ = 'Bio.Cluster'
Function Details [hide private]

read(handle)

source code 

Read gene expression data from the file handle and return a Record.

The file should be in the file format defined for Michael Eisen's Cluster/TreeView program.