Package Bio :: Package Restriction :: Module Restriction :: Class Palindromic
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Type Palindromic

source code

 object --+            
       type --+        
RestrictionType --+    
        AbstractCut --+
Known Subclasses:

Implement methods for enzymes with palindromic recognition sites.

palindromic means : the recognition site and its reverse complement are
Remarks : an enzyme with a site CGNNCG is palindromic even if some
of the sites that it will recognise are not. for example here : CGAACG

Internal use only. Not meant to be instantiated.

Instance Methods [hide private]

Inherited from RestrictionType: __add__, __div__, __eq__, __floordiv__, __ge__, __gt__, __hash__, __init__, __le__, __len__, __lt__, __mod__, __ne__, __rdiv__, __repr__, __rfloordiv__, __rshift__, __rtruediv__, __str__, __truediv__

Inherited from type: __call__, __delattr__, __getattribute__, __instancecheck__, __new__, __setattr__, __subclasscheck__, __subclasses__, mro

Inherited from object: __format__, __reduce__, __reduce_ex__, __sizeof__, __subclasshook__

Class Methods [hide private]
Return a list of cutting sites of the enzyme in the sequence (PRIVATE).
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Return if the enzyme has a palindromic recoginition site.
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Inherited from AbstractCut: all_suppliers, equischizomers, frequency, is_equischizomer, is_isoschizomer, is_neoschizomer, isoschizomers, neoschizomers, search

Properties [hide private]

Inherited from type: __abstractmethods__, __base__, __bases__, __basicsize__, __dictoffset__, __flags__, __itemsize__, __mro__, __name__, __weakrefoffset__

Inherited from object: __class__

Method Details [hide private]

Class Method

source code 

Return a list of cutting sites of the enzyme in the sequence (PRIVATE).

For internal use only.

Implement the search method for palindromic enzymes.