Package Bio :: Package SearchIO :: Package ExonerateIO :: Module exonerate_text :: Class ExonerateTextParser
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Class ExonerateTextParser

source code

                object --+    
                         |    
_base._BaseExonerateParser --+
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                            ExonerateTextParser

Parser for Exonerate plain text output.

Instance Methods [hide private]
 
parse_alignment_block(self, header) source code
 
_read_alignment(self)
Reads the raw alignment block strings, returns them in a list.
source code

Inherited from _base._BaseExonerateParser: __init__, __iter__, read_until

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables [hide private]
  _ALN_MARK = 'C4 Alignment:'
Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

parse_alignment_block(self, header)

source code 
Overrides: _base._BaseExonerateParser.parse_alignment_block