Package Bio :: Package Align :: Module AlignInfo

Module AlignInfo

Extract information from alignment objects.

In order to try and avoid huge alignment objects with tons of functions,
functions which return summary type information about alignments should
be put into classes in this module.

classes:
o SummaryInfo
o PSSM

Classes

[hide private]

SummaryInfo
Calculate summary info about the alignment.

PSSM
Represent a position specific score matrix.

Functions

[hide private]

print_info_content(summary_info, fout=None, rep_record=0)
Three column output: position, aa in representative sequence,...

source code

Variables

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Protein20Random = 0.05

Nucleotide4Random = 0.25

Function Details

[hide private]

print_info_content(summary_info, fout=None, rep_record=0)

source code

Three column output: position, aa in representative sequence,
ic_vector value