Package Bio :: Package Blast :: Module Record
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Module Record

source code

Record classes to hold BLAST output.

Classes: Blast Holds all the information from a blast search. PSIBlast Holds all the information from a psi-blast search.

Header Holds information from the header. Description Holds information about one hit description. Alignment Holds information about one alignment hit. HSP Holds information about one HSP. MultipleAlignment Holds information about a multiple alignment. DatabaseReport Holds information from the database report. Parameters Holds information from the parameters.

Classes [hide private]
  Header
Saves information from a blast header.
  Description
Stores information about one hit in the descriptions section.
  Alignment
Stores information about one hit in the alignments section.
  HSP
Stores information about one hsp in an alignment hit.
  MultipleAlignment
Holds information about a multiple alignment.
  Round
Holds information from a PSI-BLAST round.
  DatabaseReport
Holds information about a database report.
  Parameters
Holds information about the parameters.
  Blast
Saves the results from a blast search.
  PSIBlast
Saves the results from a blastpgp search.
Variables [hide private]
  __package__ = 'Bio.Blast'