Package Bio :: Package SearchIO :: Package ExonerateIO :: Module _base :: Class _BaseExonerateParser
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Class _BaseExonerateParser

source code

object --+
         |
        _BaseExonerateParser
Known Subclasses:

Abstract iterator for exonerate format.

Instance Methods [hide private]
 
__init__(self, handle)
x.__init__(...) initializes x; see help(type(x)) for signature
source code
 
__iter__(self) source code
 
read_until(self, bool_func)
Reads the file handle until the given bool function returns True.
source code
 
parse_alignment_block(self, header) source code
 
_parse_alignment_header(self) source code
 
_parse_qresult(self) source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables [hide private]
  _ALN_MARK = None
hash(x)
Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, handle)
(Constructor)

source code 
x.__init__(...) initializes x; see help(type(x)) for signature

Overrides: object.__init__
(inherited documentation)