Identifier Index

[ A B C D E F G H I J K L M N O P Q R S T U V W X Y Z _ ]

T

T (in Bio.Restriction.Restriction)	to_dict() (in Bio.SearchIO)	translate() (in Seq)
TaaI (in Bio.Restriction.Restriction)	to_dict() (in Bio.SeqIO)	translate() (in UnknownSeq)
TabIO (in Bio.SeqIO)	to_dict() (in Record)	translate() (in Bio.Seq)
TabIterator() (in Bio.SeqIO.TabIO)	to_generic() (in MultipleAlignment)	translate() (in SeqFeature)
TabRandomAccess (in Bio.SeqIO._index)	to_hex() (in BranchColor)	translate() (in SeqRecord)
TabWriter (in Bio.SeqIO.TabIO)	to_linear() (in FormattedSeq)	translate() (in CodonSeq)
tag (in Bio.SeqIO.AbiIO)	to_networkx() (in Bio.Phylo._utils)	TranslationError (in Bio.Data.CodonTable)
TaggingConsumer (in Bio.SearchIO._legacy.ParserSupport)	to_phylogeny() (in Clade)	transpose() (in Array)
TaiI (in Bio.Restriction.Restriction)	to_phyloxml_container() (in Phylogeny)	Tree (in Bio.Cluster)
TaqI (in Bio.Restriction.Restriction)	to_rgb() (in BranchColor)	Tree (in Bio.Nexus.Trees)
TaqII (in Bio.Restriction.Restriction)	to_seqfeature() (in ProteinDomain)	Tree (in Bio.Phylo.BaseTree)
TaqIII (in Bio.Restriction.Restriction)	to_seqrecord() (in Sequence)	Tree (in Bio.Phylo.CDAO)
TasI (in Bio.Restriction.Restriction)	to_string() (in FeatureSet)	Tree (in Bio.Phylo.NeXML)
TatI (in Bio.Restriction.Restriction)	to_string() (in GraphSet)	Tree (in Bio.Phylo.Newick)
TauI (in Bio.Restriction.Restriction)	to_string() (in Track)	TREE_TEMPLATE (in Bio.Phylo.NexusIO)
taxonomy (in Clade)	to_string() (in Tree)	treecluster() (in Record)
Taxonomy (in Bio.Phylo.PhyloXML)	to_strings() (in Writer)	treecluster() (in Bio.Cluster._cluster)
taxonomy() (in _FeatureConsumer)	toClaRecord() (in Domain)	treecluster() (in Bio.Cluster)
taxonomy() (in _RecordConsumer)	toDesRecord() (in Domain)	TreeConstruction (in Bio.Phylo)
taxonomy() (in Writer)	toDesRecord() (in Node)	TreeConstructor (in Bio.Phylo.TreeConstruction)
TAXSET (in Bio.Nexus.Nexus)	TogoWS (in Bio)	TreeElement (in Bio.Phylo.BaseTree)
TCoffeeCommandline (in Bio.Align.Applications._TCoffee)	toHieRecord() (in Node)	TreeError (in Bio.Nexus.Trees)
tell() (in UndoHandle)	token_dict (in Bio.Phylo.NewickIO)	TreeMixin (in Bio.Phylo.BaseTree)
tell() (in _AddTellHandle)	tokenizer (in Bio.Phylo.NewickIO)	Trees (in Bio.Nexus)
tell() (in BgzfReader)	tokens (in Bio.Phylo.NewickIO)	TreeSearcher (in Bio.Phylo.TreeConstruction)
tell() (in BgzfWriter)	toMultipleSeqAlignment() (in CodonAlignment)	trie (in Bio)
TelomereSegment (in Bio.Graphics.BasicChromosome)	tomutable() (in Seq)	trie() (in Bio.trie)
terminal_gap_to_missing() (in Nexus)	tool (in Bio.Entrez)	triefind (in Bio)
test_genic_diff_all() (in GenePopController)	topology() (in _FeatureConsumer)	trim_str() (in Bio._utils)
test_genic_diff_pair() (in GenePopController)	toseq() (in MutableSeq)	Tru1I (in Bio.Restriction.Restriction)
test_genotypic_diff_all() (in GenePopController)	toSeq() (in CodonSeq)	Tru9I (in Bio.Restriction.Restriction)
test_genotypic_diff_pair() (in GenePopController)	toseq() (in DBSeq)	tsa() (in _FeatureConsumer)
test_global_hz_deficiency() (in GenePopController)	tostring() (in Crystal)	tsa() (in _RecordConsumer)
test_global_hz_excess() (in GenePopController)	tostring() (in DBSeq)	TscAI (in Bio.Restriction.Restriction)
test_hw_global() (in EasyController)	total_branch_length() (in TreeMixin)	TseFI (in Bio.Restriction.Restriction)
test_hw_pop() (in EasyController)	TpyTP2I (in Bio.Restriction.Restriction)	TseI (in Bio.Restriction.Restriction)
test_ld() (in GenePopController)	trace() (in Chain)	TsoI (in Bio.Restriction.Restriction)
test_ld_all_pair() (in EasyController)	trace() (in TreeMixin)	Tsp45I (in Bio.Restriction.Restriction)
test_pop_hz_deficiency() (in GenePopController)	Track (in Bio.Graphics.GenomeDiagram._Track)	Tsp4CI (in Bio.Restriction.Restriction)
test_pop_hz_excess() (in GenePopController)	train() (in BaumWelchTrainer)	TspARh3I (in Bio.Restriction.Restriction)
test_pop_hz_prob() (in GenePopController)	train() (in KnownStateTrainer)	TspDTI (in Bio.Restriction.Restriction)
TfiI (in Bio.Restriction.Restriction)	train() (in Bio.LogisticRegression)	TspEI (in Bio.Restriction.Restriction)
three_to_index() (in Bio.PDB.Polypeptide)	train() (in Bio.MaxEntropy)	TspGWI (in Bio.Restriction.Restriction)
three_to_one() (in Bio.PDB.Polypeptide)	train() (in Bio.NaiveBayes)	TspMI (in Bio.Restriction.Restriction)
ThreeLetterProtein (in Bio.Alphabet)	train() (in Bio.kNN)	TspRI (in Bio.Restriction.Restriction)
threshold() (in _ParametersConsumer)	train_bw() (in Bio.MarkovModel)	TssI (in Bio.Restriction.Restriction)
threshold_balanced() (in ScoreDistribution)	train_visible() (in Bio.MarkovModel)	TstI (in Bio.Restriction.Restriction)
threshold_fnr() (in ScoreDistribution)	Trainer (in Bio.HMM)	TsuI (in Bio.Restriction.Restriction)
threshold_fpr() (in ScoreDistribution)	TrainingSequence (in Bio.HMM.Trainer)	Tth111I (in Bio.Restriction.Restriction)
threshold_patser() (in ScoreDistribution)	TranalignCommandline (in Bio.Emboss.Applications)	Tth111II (in Bio.Restriction.Restriction)
thresholds (in Bio.motifs)	trans (in DistanceCalculator)	turn3 (in align)
title() (in _FeatureConsumer)	transcribe() (in Seq)	turn4 (in align)
title() (in _RecordConsumer)	transcribe() (in UnknownSeq)	turn5 (in align)
title() (in _AlignmentConsumer)	transcribe() (in Bio.Seq)	two_mat_correlation() (in Bio.SubsMat)
Tm_GC() (in Bio.SeqUtils.MeltingTemp)	transfac (in Bio.motifs)	two_mat_DJS() (in Bio.SubsMat)
Tm_NN() (in Bio.SeqUtils.MeltingTemp)	transform() (in Atom)	two_mat_relative_entropy() (in Bio.SubsMat)
Tm_staluc() (in Bio.SeqUtils.MeltingTemp)	transform() (in Entity)	TwoCuts (in Bio.Restriction.Restriction)
Tm_Wallace() (in Bio.SeqUtils.MeltingTemp)	transformation() (in StepMatrix)	type() (in Writer)
tname() (in Generic_dbutils)	transitions_from() (in HiddenMarkovModel)	typedict (in Bio.Restriction.Restriction)
to_alignment() (in Phylogeny)	transitions_to() (in HiddenMarkovModel)	typedict (in Bio.Restriction.Restriction_Dictionary)
to_circular() (in FormattedSeq)	translate() (in ColorTranslator)