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Package Bio :: Package SCOP :: Class Node
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Class Node

source code

object --+
         |
        Node
Known Subclasses:
A node in the Scop hierarchy

sunid  -- SCOP unique identifiers. e.g. '14986'

parent -- The parent node

children -- A list of child nodes

sccs     -- SCOP concise classification string. e.g. 'a.1.1.2'

type     -- A 2 letter node type code. e.g. 'px' for domains

description --
Instance Methods [hide private]
 
__init__(self, scop=None)
Create a Node in the scop hierarchy.		 source code
 
__str__(self)
str(x)		 source code
 
toHieRecord(self)
Return an Hie.Record		 source code
 
toDesRecord(self)
Return a Des.Record		 source code
 
getChildren(self)
Return a list of children of this Node		 source code
 
getParent(self)
Return the parent of this Node		 source code
 
getDescendents(self, node_type)
Return a list of all decendent nodes of the given type.		 source code
 
getAscendent(self, node_type)
Return the ancenstor node of the given type, or None.Node type can a two letter code or longer description.		 source code

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, scop=None)
(Constructor)

source code  
Create a Node in the scop hierarchy.  If a Scop instance is provided to the
constructor, this will be used to lookup related references using the SQL
methods.  If no instance is provided, it is assumed the whole tree exists
and is connected.
Overrides: object.__init__

__str__(self)
(Informal representation operator)

source code  
str(x)
Overrides: object.__str__
(inherited documentation)

getDescendents(self, node_type)

source code  
Return a list of all decendent nodes of the given type. Node type can a
two letter code or longer description. e.g. 'fa' or 'family'

getAscendent(self, node_type)

source code  
Return the ancenstor node of the given type, or None.Node type can a
two letter code or longer description. e.g. 'fa' or 'family'

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