Package Bio :: Package Nexus :: Module Nexus :: Class StepMatrix
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Class StepMatrix

source code

object --+
         |
        StepMatrix

Calculate a stepmatrix for weighted parsimony.

See Wheeler (1990), Cladistics 6:269-275.

Instance Methods [hide private]
 
__init__(self, symbols, gap)
x.__init__(...) initializes x; see help(type(x)) for signature
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set(self, x, y, value)
Swaps the value.
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add(self, x, y, value) source code
 
sum(self) source code
 
transformation(self) source code
 
weighting(self) source code
 
smprint(self, name='your_name_here')
Prints a stepmatrix.
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Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, symbols, gap)
(Constructor)

source code 
x.__init__(...) initializes x; see help(type(x)) for signature
Overrides: object.__init__
(inherited documentation)