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Identifier Index
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]
D
d1_to_index
(in
Bio.PDB.Polypeptide
)
dna
(in
BspTNI
)
dna
(in
NgoMIV
)
d3_to_index
(in
Bio.PDB.Polypeptide
)
dna
(in
BsrBI
)
dna
(in
NhaXI
)
darken()
(in
Bio.Graphics.KGML_vis
)
dna
(in
BsrDI
)
dna
(in
NheI
)
Data
(in
Bio
)
dna
(in
BsrFI
)
dna
(in
NhoI
)
data
(in
DBSeq
)
dna
(in
BsrGI
)
dna
(in
NlaCI
)
data_file_division()
(in
_FeatureConsumer
)
dna
(in
BsrI
)
dna
(in
NlaIII
)
data_file_division()
(in
_RecordConsumer
)
dna
(in
BssAI
)
dna
(in
NlaIV
)
data_generator()
(in
Record
)
dna
(in
BssECI
)
dna
(in
Nli3877I
)
data_quartiles()
(in
GraphSet
)
dna
(in
BssHII
)
dna
(in
NmeA6CIII
)
data_table()
(in
Bio.NMR.xpktools
)
dna
(in
BssMI
)
dna
(in
NmeAIII
)
database()
(in
_DatabaseReportConsumer
)
dna
(in
BssNAI
)
dna
(in
NmeDI
)
database_info()
(in
_HeaderConsumer
)
dna
(in
BssNI
)
dna
(in
NmuCI
)
database_length()
(in
_ParametersConsumer
)
dna
(in
BssSI
)
dna
(in
NotI
)
DatabaseLoader
(in
BioSQL.Loader
)
dna
(in
BssT1I
)
dna
(in
NpeUS61II
)
DatabaseRemover
(in
BioSQL.Loader
)
dna
(in
Bst1107I
)
dna
(in
NruI
)
DatabaseReport
(in
Bio.Blast.Record
)
dna
(in
Bst2BI
)
dna
(in
NsbI
)
DataHandler
(in
Bio.Entrez.Parser
)
dna
(in
Bst2UI
)
dna
(in
NsiI
)
Date
(in
Bio.Phylo.PhyloXML
)
dna
(in
Bst4CI
)
dna
(in
NspBII
)
date()
(in
_FeatureConsumer
)
dna
(in
Bst6I
)
dna
(in
NspI
)
date()
(in
_RecordConsumer
)
dna
(in
BstACI
)
dna
(in
NspV
)
date()
(in
Parser
)
dna
(in
BstAFI
)
dna
(in
ObaBS10I
)
date()
(in
Writer
)
dna
(in
BstAPI
)
dna
(in
OgrI
)
db
(in
Bio.motifs.jaspar
)
dna
(in
BstAUI
)
dna
(in
OliI
)
db_source()
(in
_FeatureConsumer
)
dna
(in
BstBAI
)
dna
(in
OspHL35III
)
db_source()
(in
_RecordConsumer
)
dna
(in
BstBI
)
dna
(in
PabI
)
dblink()
(in
_FeatureConsumer
)
dna
(in
BstC8I
)
dna
(in
Pac19842II
)
dblink()
(in
_RecordConsumer
)
dna
(in
BstDEI
)
dna
(in
PacI
)
DBSeq
(in
BioSQL.BioSeq
)
dna
(in
BstDSI
)
dna
(in
PacIII
)
DBSeqRecord
(in
BioSQL.BioSeq
)
dna
(in
BstEII
)
dna
(in
PaeI
)
DBServer
(in
BioSQL.BioSeqDatabase
)
dna
(in
BstENI
)
dna
(in
PaeR7I
)
DBUtils
(in
BioSQL
)
dna
(in
BstF5I
)
dna
(in
PagI
)
dbxrefs
(in
DBSeqRecord
)
dna
(in
BstFNI
)
dna
(in
Pal408I
)
Dde51507I
(in
Bio.Restriction.Restriction
)
dna
(in
BstH2I
)
dna
(in
PalAI
)
DdeI
(in
Bio.Restriction.Restriction
)
dna
(in
BstHHI
)
dna
(in
PasI
)
deduplicate()
(in
Bio.Graphics.GenomeDiagram._AbstractDrawer
)
dna
(in
BstKTI
)
dna
(in
PauI
)
DEFAULT_BOUNDARY_CHARS
(in
Bio.triefind
)
dna
(in
BstMAI
)
dna
(in
Pba2294I
)
default_codon_alphabet
(in
Bio.codonalign.codonalphabet
)
dna
(in
BstMBI
)
dna
(in
PcaII
)
default_codon_table
(in
Bio.codonalign.codonalphabet
)
dna
(in
BstMCI
)
dna
(in
PceI
)
DEFAULT_ENCODING
(in
Bio.Phylo.PhyloXMLIO
)
dna
(in
BstMWI
)
dna
(in
PciI
)
DEFAULT_NAMESPACE
(in
Bio.Phylo.NeXMLIO
)
dna
(in
BstNI
)
dna
(in
PciSI
)
DEFAULT_PSEUDO
(in
MarkovModelBuilder
)
dna
(in
BstNSI
)
dna
(in
Pcr308II
)
DEFAULTNEXUS
(in
Bio.Nexus.Nexus
)
dna
(in
BstPAI
)
dna
(in
PcsI
)
DefaultParser
(in
Bio.PDB.mmtf
)
dna
(in
BstPI
)
dna
(in
PctI
)
Defined
(in
Bio.Restriction.Restriction
)
dna
(in
BstSCI
)
dna
(in
Pdi8503III
)
defined()
(in
Analysis
)
dna
(in
BstSFI
)
dna
(in
PdiI
)
definition()
(in
_FeatureConsumer
)
dna
(in
BstSLI
)
dna
(in
PdmI
)
definition()
(in
_RecordConsumer
)
dna
(in
BstSNI
)
dna
(in
Pdu1735I
)
degenerate_consensus
(in
Motif
)
dna
(in
BstUI
)
dna
(in
PenI
)
degenerate_consensus
(in
GenericPositionMatrix
)
dna
(in
BstV1I
)
dna
(in
PfeI
)
del_feature()
(in
FeatureSet
)
dna
(in
BstV2I
)
dna
(in
Pfl1108I
)
del_graph()
(in
GraphSet
)
dna
(in
BstX2I
)
dna
(in
Pfl23II
)
del_set()
(in
Track
)
dna
(in
BstXI
)
dna
(in
Pfl8569I
)
del_track()
(in
Diagram
)
dna
(in
BstYI
)
dna
(in
PflFI
)
depths()
(in
TreeMixin
)
dna
(in
BstZ17I
)
dna
(in
PflMI
)
Des
(in
Bio.SCOP
)
dna
(in
BstZI
)
dna
(in
PflPt14I
)
desc()
(in
Writer
)
dna
(in
Bsu15I
)
dna
(in
PfoI
)
Description
(in
Bio.Blast.Record
)
dna
(in
Bsu36I
)
dna
(in
PfrJS12IV
)
description
(in
Hit
)
dna
(in
BsuI
)
dna
(in
PfrJS12V
)
description
(in
QueryResult
)
dna
(in
BsuRI
)
dna
(in
PfrJS15III
)
description()
(in
Writer
)
dna
(in
BsuTUI
)
dna
(in
Pin17FIII
)
description()
(in
_DescriptionConsumer
)
dna
(in
BtgI
)
dna
(in
PinAI
)
description_all
(in
Hit
)
dna
(in
BtgZI
)
dna
(in
PinP23II
)
description_header()
(in
_DescriptionConsumer
)
dna
(in
BthCI
)
dna
(in
PinP59III
)
DescriptionExt
(in
Bio.Blast.Record
)
dna
(in
BtrI
)
dna
(in
PkrI
)
DescriptionExtItem
(in
Bio.Blast.Record
)
dna
(in
BtsCI
)
dna
(in
PlaDI
)
destroy_transition()
(in
MarkovModelBuilder
)
dna
(in
BtsI
)
dna
(in
Ple19I
)
detach_child()
(in
Entity
)
dna
(in
BtsIMutI
)
dna
(in
PleI
)
detach_parent()
(in
Atom
)
dna
(in
BtuMI
)
dna
(in
PliMI
)
detach_parent()
(in
DisorderedEntityWrapper
)
dna
(in
Bve1B23I
)
dna
(in
PluTI
)
detach_parent()
(in
Entity
)
dna
(in
BveI
)
dna
(in
PmaCI
)
df_search()
(in
Bio.Pathway.Rep.MultiGraph
)
dna
(in
Cac8I
)
dna
(in
PmeI
)
diagALL
(in
Bio.SubsMat
)
dna
(in
CaiI
)
dna
(in
PmlI
)
diagNO
(in
Bio.SubsMat
)
dna
(in
Cal14237I
)
dna
(in
PpiI
)
diagONLY
(in
Bio.SubsMat
)
dna
(in
CalB3II
)
dna
(in
PpiP13II
)
Diagram
(in
Bio.Graphics.GenomeDiagram._Diagram
)
dna
(in
Cau10061II
)
dna
(in
PpsI
)
DialignCommandline
(in
Bio.Align.Applications._Dialign
)
dna
(in
CauII
)
dna
(in
Ppu10I
)
Dice
(in
Bio.PDB
)
dna
(in
Cba13II
)
dna
(in
Ppu21I
)
dictionary_match
(in
Bio.pairwise2
)
dna
(in
Cba16038I
)
dna
(in
PpuMI
)
DictionaryElement
(in
Bio.Entrez.Parser
)
dna
(in
Cbo67071IV
)
dna
(in
PscI
)
DifferentialCutsite
(in
Bio.CAPS
)
dna
(in
Cch467III
)
dna
(in
Pse18267I
)
DiffseqCommandline
(in
Bio.Emboss.Applications
)
dna
(in
CchII
)
dna
(in
PshAI
)
dindex_to_1
(in
Bio.PDB.Polypeptide
)
dna
(in
CchIII
)
dna
(in
PshBI
)
dindex_to_3
(in
Bio.PDB.Polypeptide
)
dna
(in
CciI
)
dna
(in
PsiI
)
DinI
(in
Bio.Restriction.Restriction
)
dna
(in
CciNI
)
dna
(in
Psp0357II
)
directory
(in
DataHandler
)
dna
(in
Cco14983V
)
dna
(in
Psp03I
)
disordered_add()
(in
DisorderedAtom
)
dna
(in
Cco14983VI
)
dna
(in
Psp124BI
)
disordered_add()
(in
DisorderedEntityWrapper
)
dna
(in
CcrNAIII
)
dna
(in
Psp1406I
)
disordered_add()
(in
DisorderedResidue
)
dna
(in
Cdi11397I
)
dna
(in
Psp5II
)
disordered_get()
(in
DisorderedEntityWrapper
)
dna
(in
CdiI
)
dna
(in
Psp6I
)
disordered_get_id_list()
(in
DisorderedEntityWrapper
)
dna
(in
CdpI
)
dna
(in
PspCI
)
disordered_get_list()
(in
DisorderedEntityWrapper
)
dna
(in
Cdu23823II
)
dna
(in
PspEI
)
disordered_has_id()
(in
DisorderedEntityWrapper
)
dna
(in
CfoI
)
dna
(in
PspFI
)
disordered_select()
(in
DisorderedEntityWrapper
)
dna
(in
Cfr10I
)
dna
(in
PspGI
)
DisorderedAtom
(in
Bio.PDB.Atom
)
dna
(in
Cfr13I
)
dna
(in
PspLI
)
DisorderedEntityWrapper
(in
Bio.PDB.Entity
)
dna
(in
Cfr42I
)
dna
(in
PspN4I
)
DisorderedResidue
(in
Bio.PDB.Residue
)
dna
(in
Cfr9I
)
dna
(in
PspOMI
)
display()
(in
Tree
)
dna
(in
CfrI
)
dna
(in
PspOMII
)
DisplayRepresentation
(in
Bio.Graphics
)
dna
(in
CfrMH13II
)
dna
(in
PspPI
)
dist_pearson()
(in
PositionSpecificScoringMatrix
)
dna
(in
CfrMH16VI
)
dna
(in
PspPPI
)
dist_pearson_at()
(in
PositionSpecificScoringMatrix
)
dna
(in
Cfupf3II
)
dna
(in
PspPRI
)
distance()
(in
Tree
)
dna
(in
Cgl13032I
)
dna
(in
PspXI
)
distance()
(in
TreeMixin
)
dna
(in
Cgl13032II
)
dna
(in
PsrI
)
DistanceCalculator
(in
Bio.Phylo.TreeConstruction
)
dna
(in
ChaI
)
dna
(in
PssI
)
DistanceMatrix
(in
Bio.Phylo.TreeConstruction
)
dna
(in
Cje265V
)
dna
(in
Pst14472I
)
distancematrix()
(in
Record
)
dna
(in
Cje54107III
)
dna
(in
Pst145I
)
distancematrix()
(in
Bio.Cluster._cluster
)
dna
(in
CjeFIII
)
dna
(in
Pst273I
)
distancematrix()
(in
Bio.Cluster
)
dna
(in
CjeFV
)
dna
(in
PstI
)
DistanceTreeConstructor
(in
Bio.Phylo.TreeConstruction
)
dna
(in
CjeI
)
dna
(in
PstNI
)
Distribution
(in
Bio.Graphics
)
dna
(in
CjeNII
)
dna
(in
PsuGI
)
Distribution
(in
Bio.Phylo.PhyloXML
)
dna
(in
CjeNIII
)
dna
(in
PsuI
)
distribution()
(in
Parser
)
dna
(in
CjeNV
)
dna
(in
PsyI
)
distribution()
(in
Writer
)
dna
(in
CjeP659IV
)
dna
(in
PteI
)
distribution()
(in
PositionSpecificScoringMatrix
)
dna
(in
CjePI
)
dna
(in
PvuI
)
DistributionPage
(in
Bio.Graphics.Distribution
)
dna
(in
CjuI
)
dna
(in
PvuII
)
DIWV
(in
Bio.SeqUtils.ProtParamData
)
dna
(in
CjuII
)
dna
(in
Rba2021I
)
dna
(in
AanI
)
dna
(in
Cla11845III
)
dna
(in
RceI
)
dna
(in
AarI
)
dna
(in
ClaI
)
dna
(in
RdeGBI
)
dna
(in
AasI
)
dna
(in
Cly7489II
)
dna
(in
RdeGBII
)
dna
(in
AatII
)
dna
(in
Cma23826I
)
dna
(in
RdeGBIII
)
dna
(in
Aba6411II
)
dna
(in
CpoI
)
dna
(in
RflFIII
)
dna
(in
AbaB8342IV
)
dna
(in
CseI
)
dna
(in
RgaI
)
dna
(in
AbaCIII
)
dna
(in
CsiI
)
dna
(in
RigI
)
dna
(in
AbaSI
)
dna
(in
Csp2014I
)
dna
(in
RlaI
)
dna
(in
AbaUMB2I
)
dna
(in
Csp6I
)
dna
(in
RlaII
)
dna
(in
AbsI
)
dna
(in
CspAI
)
dna
(in
RleAI
)
dna
(in
Acc16I
)
dna
(in
CspCI
)
dna
(in
Rmu369III
)
dna
(in
Acc36I
)
dna
(in
CspI
)
dna
(in
RpaB5I
)
dna
(in
Acc65I
)
dna
(in
CstMI
)
dna
(in
RpaBI
)
dna
(in
Acc65V
)
dna
(in
CviAII
)
dna
(in
RpaI
)
dna
(in
AccB1I
)
dna
(in
CviJI
)
dna
(in
RpaTI
)
dna
(in
AccB7I
)
dna
(in
CviKI_1
)
dna
(in
RruI
)
dna
(in
AccBSI
)
dna
(in
CviQI
)
dna
(in
RsaI
)
dna
(in
AccI
)
dna
(in
CviRI
)
dna
(in
RsaNI
)
dna
(in
AccII
)
dna
(in
Dde51507I
)
dna
(in
RseI
)
dna
(in
AccIII
)
dna
(in
DdeI
)
dna
(in
Rsp008IV
)
dna
(in
AceIII
)
dna
(in
DinI
)
dna
(in
Rsp008V
)
dna
(in
AchA6III
)
dna
(in
DpnI
)
dna
(in
Rsp531II
)
dna
(in
AciI
)
dna
(in
DpnII
)
dna
(in
RspPBTS2III
)
dna
(in
AclI
)
dna
(in
DraI
)
dna
(in
Rsr2I
)
dna
(in
AclWI
)
dna
(in
DraII
)
dna
(in
RsrII
)
dna
(in
Aco12261II
)
dna
(in
DraIII
)
dna
(in
Rtr1953I
)
dna
(in
AcoI
)
dna
(in
DraRI
)
dna
(in
SacI
)
dna
(in
AcoY31II
)
dna
(in
DrdI
)
dna
(in
SacII
)
dna
(in
AcsI
)
dna
(in
DrdII
)
dna
(in
Saf8902III
)
dna
(in
AcuI
)
dna
(in
DrdIV
)
dna
(in
Sag901I
)
dna
(in
AcvI
)
dna
(in
DriI
)
dna
(in
SalI
)
dna
(in
AcyI
)
dna
(in
DsaI
)
dna
(in
SanDI
)
dna
(in
AdeI
)
dna
(in
DseDI
)
dna
(in
SapI
)
dna
(in
Adh6U21I
)
dna
(in
DvuIII
)
dna
(in
SaqAI
)
dna
(in
AfaI
)
dna
(in
EaeI
)
dna
(in
SatI
)
dna
(in
AfeI
)
dna
(in
EagI
)
dna
(in
Sau3AI
)
dna
(in
AfiI
)
dna
(in
Eam1104I
)
dna
(in
Sau96I
)
dna
(in
AflII
)
dna
(in
Eam1105I
)
dna
(in
SauI
)
dna
(in
AflIII
)
dna
(in
EarI
)
dna
(in
Sba460II
)
dna
(in
AgeI
)
dna
(in
EciI
)
dna
(in
SbfI
)
dna
(in
AgsI
)
dna
(in
Ecl136II
)
dna
(in
Sbo46I
)
dna
(in
AhaIII
)
dna
(in
Ecl234I
)
dna
(in
ScaI
)
dna
(in
AhdI
)
dna
(in
Ecl35734I
)
dna
(in
SchI
)
dna
(in
AhlI
)
dna
(in
EclXI
)
dna
(in
SciI
)
dna
(in
AhyRBAHI
)
dna
(in
Eco105I
)
dna
(in
ScoDS2II
)
dna
(in
AhyYL17I
)
dna
(in
Eco130I
)
dna
(in
ScrFI
)
dna
(in
AjiI
)
dna
(in
Eco147I
)
dna
(in
SdaI
)
dna
(in
AjnI
)
dna
(in
Eco24I
)
dna
(in
SdeAI
)
dna
(in
AjuI
)
dna
(in
Eco31I
)
dna
(in
SdeOSI
)
dna
(in
AleI
)
dna
(in
Eco32I
)
dna
(in
SduI
)
dna
(in
AlfI
)
dna
(in
Eco43896II
)
dna
(in
SecI
)
dna
(in
AloI
)
dna
(in
Eco4465II
)
dna
(in
SelI
)
dna
(in
AluBI
)
dna
(in
Eco47I
)
dna
(in
Sen17963III
)
dna
(in
AluI
)
dna
(in
Eco47III
)
dna
(in
SenA1673III
)
dna
(in
Alw21I
)
dna
(in
Eco52I
)
dna
(in
SenSARA26III
)
dna
(in
Alw26I
)
dna
(in
Eco53kI
)
dna
(in
SenTFIV
)
dna
(in
Alw44I
)
dna
(in
Eco57I
)
dna
(in
SetI
)
dna
(in
AlwFI
)
dna
(in
Eco57MI
)
dna
(in
SexAI
)
dna
(in
AlwI
)
dna
(in
Eco72I
)
dna
(in
SfaAI
)
dna
(in
AlwNI
)
dna
(in
Eco81I
)
dna
(in
SfaNI
)
dna
(in
Ama87I
)
dna
(in
Eco88I
)
dna
(in
SfcI
)
dna
(in
AmaCSI
)
dna
(in
Eco91I
)
dna
(in
SfeI
)
dna
(in
Aod1I
)
dna
(in
EcoBLMcrX
)
dna
(in
SfiI
)
dna
(in
Aor13HI
)
dna
(in
EcoE1140I
)
dna
(in
SfoI
)
dna
(in
Aor51HI
)
dna
(in
EcoHI
)
dna
(in
Sfr274I
)
dna
(in
AoxI
)
dna
(in
EcoHSI
)
dna
(in
Sfr303I
)
dna
(in
ApaBI
)
dna
(in
EcoICRI
)
dna
(in
SfuI
)
dna
(in
ApaI
)
dna
(in
EcoMVII
)
dna
(in
SgeI
)
dna
(in
ApaLI
)
dna
(in
EcoNI
)
dna
(in
SgfI
)
dna
(in
ApeKI
)
dna
(in
EcoNIH6II
)
dna
(in
SgrAI
)
dna
(in
ApoI
)
dna
(in
EcoO109I
)
dna
(in
SgrBI
)
dna
(in
ApyPI
)
dna
(in
EcoO65I
)
dna
(in
SgrDI
)
dna
(in
AquII
)
dna
(in
EcoRI
)
dna
(in
SgrTI
)
dna
(in
AquIII
)
dna
(in
EcoRII
)
dna
(in
SgsI
)
dna
(in
AquIV
)
dna
(in
EcoRV
)
dna
(in
SimI
)
dna
(in
ArsI
)
dna
(in
EcoT14I
)
dna
(in
SinI
)
dna
(in
AscI
)
dna
(in
EcoT22I
)
dna
(in
SlaI
)
dna
(in
AseI
)
dna
(in
EcoT38I
)
dna
(in
SmaI
)
dna
(in
Asi256I
)
dna
(in
EgeI
)
dna
(in
SmaUMH5I
)
dna
(in
AsiGI
)
dna
(in
EheI
)
dna
(in
SmaUMH8I
)
dna
(in
AsiSI
)
dna
(in
Eli8509II
)
dna
(in
SmiI
)
dna
(in
Asp103I
)
dna
(in
ErhI
)
dna
(in
SmiMI
)
dna
(in
Asp114pII
)
dna
(in
EsaBC3I
)
dna
(in
SmlI
)
dna
(in
Asp700I
)
dna
(in
EsaSSI
)
dna
(in
SmoI
)
dna
(in
Asp718I
)
dna
(in
Esp3007I
)
dna
(in
SnaBI
)
dna
(in
AspA2I
)
dna
(in
Esp3I
)
dna
(in
SnaI
)
dna
(in
AspBHI
)
dna
(in
EspI
)
dna
(in
Sno506I
)
dna
(in
AspDUT2V
)
dna
(in
FaeI
)
dna
(in
SpeI
)
dna
(in
AspJHL3II
)
dna
(in
FaiI
)
dna
(in
SphI
)
dna
(in
AspLEI
)
dna
(in
FalI
)
dna
(in
SplI
)
dna
(in
AspNIH4III
)
dna
(in
FaqI
)
dna
(in
SpnRII
)
dna
(in
AspS9I
)
dna
(in
FatI
)
dna
(in
SpoDI
)
dna
(in
AspSLV7III
)
dna
(in
FauI
)
dna
(in
SrfI
)
dna
(in
Asu14238IV
)
dna
(in
FauNDI
)
dna
(in
Sse232I
)
dna
(in
AsuC2I
)
dna
(in
FbaI
)
dna
(in
Sse8387I
)
dna
(in
AsuHPI
)
dna
(in
FblI
)
dna
(in
Sse8647I
)
dna
(in
AsuI
)
dna
(in
Fco1691IV
)
dna
(in
Sse9I
)
dna
(in
AsuII
)
dna
(in
FinI
)
dna
(in
SseBI
)
dna
(in
AsuNHI
)
dna
(in
FmuI
)
dna
(in
SsiI
)
dna
(in
AteTI
)
dna
(in
Fnu4HI
)
dna
(in
Ssp6803IV
)
dna
(in
AvaI
)
dna
(in
FnuDII
)
dna
(in
Ssp714II
)
dna
(in
AvaII
)
dna
(in
FokI
)
dna
(in
SspD5I
)
dna
(in
AvaIII
)
dna
(in
FriOI
)
dna
(in
SspDI
)
dna
(in
AvrII
)
dna
(in
FseI
)
dna
(in
SspI
)
dna
(in
Awo1030IV
)
dna
(in
Fsp4HI
)
dna
(in
SspMI
)
dna
(in
AxyI
)
dna
(in
FspAI
)
dna
(in
SstE37I
)
dna
(in
BaeGI
)
dna
(in
FspBI
)
dna
(in
SstI
)
dna
(in
BaeI
)
dna
(in
FspEI
)
dna
(in
Sth132I
)
dna
(in
Bag18758I
)
dna
(in
FspI
)
dna
(in
Sth20745III
)
dna
(in
BalI
)
dna
(in
FspPK15I
)
dna
(in
Sth302II
)
dna
(in
BamHI
)
dna
(in
FtnUV
)
dna
(in
SthSt3II
)
dna
(in
BanI
)
dna
(in
GauT27I
)
dna
(in
StsI
)
dna
(in
BanII
)
dna
(in
Gba708II
)
dna
(in
StuI
)
dna
(in
BanLI
)
dna
(in
GdiII
)
dna
(in
StyD4I
)
dna
(in
BarI
)
dna
(in
GlaI
)
dna
(in
StyI
)
dna
(in
Bau1417V
)
dna
(in
GluI
)
dna
(in
SurP32aII
)
dna
(in
BauI
)
dna
(in
GsaI
)
dna
(in
SwaI
)
dna
(in
Bbr52II
)
dna
(in
GsuI
)
dna
(in
TaaI
)
dna
(in
Bbr57III
)
dna
(in
HaeI
)
dna
(in
TaiI
)
dna
(in
Bbr7017II
)
dna
(in
HaeII
)
dna
(in
TaqI
)
dna
(in
Bbr7017III
)
dna
(in
HaeIII
)
dna
(in
TaqII
)
dna
(in
BbrPI
)
dna
(in
HapII
)
dna
(in
TaqIII
)
dna
(in
BbsI
)
dna
(in
HauII
)
dna
(in
TasI
)
dna
(in
BbuB31I
)
dna
(in
HbaII
)
dna
(in
TatI
)
dna
(in
BbuB31II
)
dna
(in
HdeNY26I
)
dna
(in
TauI
)
dna
(in
Bbv12I
)
dna
(in
HdeZA17I
)
dna
(in
TfiI
)
dna
(in
BbvCI
)
dna
(in
HgaI
)
dna
(in
TpyTP2I
)
dna
(in
BbvI
)
dna
(in
HgiAI
)
dna
(in
Tru1I
)
dna
(in
BbvII
)
dna
(in
HgiCI
)
dna
(in
Tru9I
)
dna
(in
BccI
)
dna
(in
HgiEII
)
dna
(in
TscAI
)
dna
(in
Bce3081I
)
dna
(in
HgiJII
)
dna
(in
TseFI
)
dna
(in
Bce83I
)
dna
(in
HhaI
)
dna
(in
TseI
)
dna
(in
BceAI
)
dna
(in
Hin1I
)
dna
(in
TsoI
)
dna
(in
BceSIV
)
dna
(in
Hin1II
)
dna
(in
Tsp45I
)
dna
(in
BcefI
)
dna
(in
Hin4I
)
dna
(in
Tsp4CI
)
dna
(in
BcgI
)
dna
(in
Hin4II
)
dna
(in
TspARh3I
)
dna
(in
BciT130I
)
dna
(in
Hin6I
)
dna
(in
TspDTI
)
dna
(in
BciVI
)
dna
(in
HinP1I
)
dna
(in
TspEI
)
dna
(in
BclI
)
dna
(in
HincII
)
dna
(in
TspGWI
)
dna
(in
BcnI
)
dna
(in
HindII
)
dna
(in
TspMI
)
dna
(in
BcoDI
)
dna
(in
HindIII
)
dna
(in
TspRI
)
dna
(in
BcuI
)
dna
(in
HinfI
)
dna
(in
TssI
)
dna
(in
BdaI
)
dna
(in
HpaI
)
dna
(in
TstI
)
dna
(in
BetI
)
dna
(in
HpaII
)
dna
(in
TsuI
)
dna
(in
BfaI
)
dna
(in
HphI
)
dna
(in
Tth111I
)
dna
(in
BfaSII
)
dna
(in
Hpy166II
)
dna
(in
Tth111II
)
dna
(in
BfiI
)
dna
(in
Hpy178III
)
dna
(in
UbaF11I
)
dna
(in
BfmI
)
dna
(in
Hpy188I
)
dna
(in
UbaF12I
)
dna
(in
BfoI
)
dna
(in
Hpy188III
)
dna
(in
UbaF13I
)
dna
(in
BfrI
)
dna
(in
Hpy300XI
)
dna
(in
UbaF14I
)
dna
(in
BfuAI
)
dna
(in
Hpy8I
)
dna
(in
UbaF9I
)
dna
(in
BfuI
)
dna
(in
Hpy99I
)
dna
(in
UbaPI
)
dna
(in
Bga514I
)
dna
(in
Hpy99XIII
)
dna
(in
UcoMSI
)
dna
(in
BglI
)
dna
(in
Hpy99XIV
)
dna
(in
UnbI
)
dna
(in
BglII
)
dna
(in
Hpy99XIV_mut1
)
dna
(in
Van9116I
)
dna
(in
BinI
)
dna
(in
Hpy99XXII
)
dna
(in
Van91I
)
dna
(in
BisI
)
dna
(in
HpyAV
)
dna
(in
VchE4II
)
dna
(in
BkrAM31DI
)
dna
(in
HpyAXIV
)
dna
(in
Vdi96II
)
dna
(in
Ble402II
)
dna
(in
HpyAXVIII
)
dna
(in
Vha464I
)
dna
(in
BlnI
)
dna
(in
HpyAXVI_mut1
)
dna
(in
VneI
)
dna
(in
BloAII
)
dna
(in
HpyAXVI_mut2
)
dna
(in
VpaK11AI
)
dna
(in
BlpI
)
dna
(in
HpyCH4III
)
dna
(in
VpaK11BI
)
dna
(in
BlsI
)
dna
(in
HpyCH4IV
)
dna
(in
VspI
)
dna
(in
BmcAI
)
dna
(in
HpyCH4V
)
dna
(in
Vtu19109I
)
dna
(in
Bme1390I
)
dna
(in
HpyF10VI
)
dna
(in
WviI
)
dna
(in
Bme18I
)
dna
(in
HpyF3I
)
dna
(in
XagI
)
dna
(in
BmeDI
)
dna
(in
HpySE526I
)
dna
(in
XapI
)
dna
(in
BmeRI
)
dna
(in
HpyUM032XIII
)
dna
(in
XbaI
)
dna
(in
BmeT110I
)
dna
(in
HpyUM032XIII_mut1
)
dna
(in
Xca85IV
)
dna
(in
BmgBI
)
dna
(in
HpyUM032XIV
)
dna
(in
XceI
)
dna
(in
BmgI
)
dna
(in
HpyUM037X
)
dna
(in
XcmI
)
dna
(in
BmgT120I
)
dna
(in
Hsp92I
)
dna
(in
XhoI
)
dna
(in
BmiI
)
dna
(in
Hsp92II
)
dna
(in
XhoII
)
dna
(in
BmrFI
)
dna
(in
HspAI
)
dna
(in
XmaI
)
dna
(in
BmrI
)
dna
(in
HspMHR1II
)
dna
(in
XmaIII
)
dna
(in
BmsI
)
dna
(in
Jma19592I
)
dna
(in
XmaJI
)
dna
(in
BmtI
)
dna
(in
Jma19592II
)
dna
(in
XmiI
)
dna
(in
BmuI
)
dna
(in
Jsp2502II
)
dna
(in
XmnI
)
dna
(in
BoxI
)
dna
(in
KasI
)
dna
(in
XspI
)
dna
(in
BpiI
)
dna
(in
KflI
)
dna
(in
YkrI
)
dna
(in
BplI
)
dna
(in
Kor51II
)
dna
(in
ZraI
)
dna
(in
BpmI
)
dna
(in
Kpn156V
)
dna
(in
ZrmI
)
dna
(in
Bpu10I
)
dna
(in
Kpn2I
)
dna
(in
Zsp2I
)
dna
(in
Bpu1102I
)
dna
(in
Kpn327I
)
dna_alphabet
(in
DistanceCalculator
)
dna
(in
Bpu14I
)
dna
(in
KpnI
)
DNA_DE1
(in
Bio.SeqUtils.MeltingTemp
)
dna
(in
BpuEI
)
dna
(in
KpnNH25III
)
DNA_IMM1
(in
Bio.SeqUtils.MeltingTemp
)
dna
(in
BpuMI
)
dna
(in
KpnNIH30III
)
dna_matrices
(in
DistanceCalculator
)
dna
(in
Bsa29I
)
dna
(in
KpnNIH50I
)
dna_models
(in
DistanceCalculator
)
dna
(in
BsaAI
)
dna
(in
KroI
)
DNA_NN1
(in
Bio.SeqUtils.MeltingTemp
)
dna
(in
BsaBI
)
dna
(in
Ksp22I
)
DNA_NN2
(in
Bio.SeqUtils.MeltingTemp
)
dna
(in
BsaHI
)
dna
(in
Ksp632I
)
DNA_NN3
(in
Bio.SeqUtils.MeltingTemp
)
dna
(in
BsaI
)
dna
(in
KspAI
)
DNA_NN4
(in
Bio.SeqUtils.MeltingTemp
)
dna
(in
BsaJI
)
dna
(in
KspI
)
DNA_TMM1
(in
Bio.SeqUtils.MeltingTemp
)
dna
(in
BsaWI
)
dna
(in
Kzo9I
)
DNAAlphabet
(in
Bio.Alphabet
)
dna
(in
BsaXI
)
dna
(in
Lba2029III
)
dnal
(in
Bio.Wise
)
dna
(in
BsbI
)
dna
(in
Lde4408II
)
do_not_cut()
(in
Analysis
)
dna
(in
Bsc4I
)
dna
(in
LguI
)
Dom
(in
Bio.SCOP
)
dna
(in
BscAI
)
dna
(in
LlaG50I
)
Domain
(in
Bio.SCOP
)
dna
(in
BscGI
)
dna
(in
LmnI
)
domain()
(in
Parser
)
dna
(in
Bse118I
)
dna
(in
Lmo370I
)
domain()
(in
Writer
)
dna
(in
Bse1I
)
dna
(in
Lmo911II
)
domain_architecture()
(in
Parser
)
dna
(in
Bse21I
)
dna
(in
Lpl1004II
)
domain_architecture()
(in
Writer
)
dna
(in
Bse3DI
)
dna
(in
LpnI
)
DomainArchitecture
(in
Bio.Phylo.PhyloXML
)
dna
(in
Bse8I
)
dna
(in
LpnPI
)
domainsClusteredByEv()
(in
Astral
)
dna
(in
BseAI
)
dna
(in
Lra68I
)
domainsClusteredById()
(in
Astral
)
dna
(in
BseBI
)
dna
(in
LsaDS4I
)
download_entire_pdb()
(in
PDBList
)
dna
(in
BseCI
)
dna
(in
Lsp1109I
)
download_obsolete_entries()
(in
PDBList
)
dna
(in
BseDI
)
dna
(in
Lsp48III
)
download_pdb_files()
(in
PDBList
)
dna
(in
BseGI
)
dna
(in
Lsp6406VI
)
DpnI
(in
Bio.Restriction.Restriction
)
dna
(in
BseJI
)
dna
(in
LweI
)
DpnII
(in
Bio.Restriction.Restriction
)
dna
(in
BseLI
)
dna
(in
MabI
)
DraI
(in
Bio.Restriction.Restriction
)
dna
(in
BseMI
)
dna
(in
MaeI
)
DraII
(in
Bio.Restriction.Restriction
)
dna
(in
BseMII
)
dna
(in
MaeII
)
DraIII
(in
Bio.Restriction.Restriction
)
dna
(in
BseNI
)
dna
(in
MaeIII
)
DraRI
(in
Bio.Restriction.Restriction
)
dna
(in
BsePI
)
dna
(in
MalI
)
draw()
(in
Chromosome
)
dna
(in
BseRI
)
dna
(in
MaqI
)
draw()
(in
ChromosomeSegment
)
dna
(in
BseSI
)
dna
(in
MauBI
)
draw()
(in
Organism
)
dna
(in
BseX3I
)
dna
(in
Mba11I
)
draw()
(in
SpacerSegment
)
dna
(in
BseXI
)
dna
(in
MbiI
)
draw()
(in
_ChromosomeComponent
)
dna
(in
BseYI
)
dna
(in
MboI
)
draw()
(in
BarChartDistribution
)
dna
(in
BsgI
)
dna
(in
MboII
)
draw()
(in
DistributionPage
)
dna
(in
Bsh1236I
)
dna
(in
McaTI
)
draw()
(in
LineDistribution
)
dna
(in
Bsh1285I
)
dna
(in
Mcr10I
)
draw()
(in
CircularDrawer
)
dna
(in
BshFI
)
dna
(in
McrI
)
draw()
(in
Diagram
)
dna
(in
BshNI
)
dna
(in
MfeI
)
draw()
(in
LinearDrawer
)
dna
(in
BshTI
)
dna
(in
MflI
)
draw()
(in
KGMLCanvas
)
dna
(in
BshVI
)
dna
(in
MhlI
)
draw()
(in
Bio.Phylo._utils
)
dna
(in
BsiEI
)
dna
(in
MjaIV
)
draw_arrow()
(in
Bio.Graphics.GenomeDiagram._AbstractDrawer
)
dna
(in
BsiHKAI
)
dna
(in
MkaDII
)
draw_ascii()
(in
Bio.Phylo._utils
)
dna
(in
BsiHKCI
)
dna
(in
MlsI
)
draw_bar_graph()
(in
CircularDrawer
)
dna
(in
BsiI
)
dna
(in
Mlu211III
)
draw_bar_graph()
(in
LinearDrawer
)
dna
(in
BsiSI
)
dna
(in
MluCI
)
draw_box()
(in
Bio.Graphics.GenomeDiagram._AbstractDrawer
)
dna
(in
BsiWI
)
dna
(in
MluI
)
draw_cross_link()
(in
CircularDrawer
)
dna
(in
BsiYI
)
dna
(in
MluNI
)
draw_cross_link()
(in
LinearDrawer
)
dna
(in
BslFI
)
dna
(in
Mly113I
)
draw_cut_corner_box()
(in
Bio.Graphics.GenomeDiagram._AbstractDrawer
)
dna
(in
BslI
)
dna
(in
MlyI
)
draw_feature()
(in
CircularDrawer
)
dna
(in
BsmAI
)
dna
(in
MmeI
)
draw_feature()
(in
LinearDrawer
)
dna
(in
BsmBI
)
dna
(in
MnlI
)
draw_feature_location()
(in
LinearDrawer
)
dna
(in
BsmFI
)
dna
(in
Mox20I
)
draw_feature_set()
(in
CircularDrawer
)
dna
(in
BsmI
)
dna
(in
Mph1103I
)
draw_feature_set()
(in
LinearDrawer
)
dna
(in
BsnI
)
dna
(in
MreI
)
draw_graph_set()
(in
CircularDrawer
)
dna
(in
Bso31I
)
dna
(in
MroI
)
draw_graph_set()
(in
LinearDrawer
)
dna
(in
BsoBI
)
dna
(in
MroNI
)
draw_graphviz()
(in
Bio.Phylo._utils
)
dna
(in
Bsp119I
)
dna
(in
MroXI
)
draw_greytrack()
(in
CircularDrawer
)
dna
(in
Bsp120I
)
dna
(in
MscI
)
draw_greytrack()
(in
LinearDrawer
)
dna
(in
Bsp1286I
)
dna
(in
MseI
)
draw_heat_graph()
(in
CircularDrawer
)
dna
(in
Bsp13I
)
dna
(in
MslI
)
draw_heat_graph()
(in
LinearDrawer
)
dna
(in
Bsp1407I
)
dna
(in
Msp20I
)
draw_line_graph()
(in
CircularDrawer
)
dna
(in
Bsp143I
)
dna
(in
MspA1I
)
draw_line_graph()
(in
LinearDrawer
)
dna
(in
Bsp1720I
)
dna
(in
MspCI
)
draw_polygon()
(in
Bio.Graphics.GenomeDiagram._AbstractDrawer
)
dna
(in
Bsp19I
)
dna
(in
MspGI
)
draw_scale()
(in
CircularDrawer
)
dna
(in
Bsp24I
)
dna
(in
MspI
)
draw_scale()
(in
LinearDrawer
)
dna
(in
Bsp3004IV
)
dna
(in
MspI7II
)
draw_test_tracks()
(in
CircularDrawer
)
dna
(in
Bsp460III
)
dna
(in
MspI7IV
)
draw_test_tracks()
(in
LinearDrawer
)
dna
(in
Bsp68I
)
dna
(in
MspJI
)
draw_tick()
(in
CircularDrawer
)
dna
(in
BspACI
)
dna
(in
MspR9I
)
draw_tick()
(in
LinearDrawer
)
dna
(in
BspANI
)
dna
(in
MspSC27II
)
draw_to_file()
(in
ComparativeScatterPlot
)
dna
(in
BspCNI
)
dna
(in
MssI
)
draw_track()
(in
CircularDrawer
)
dna
(in
BspD6I
)
dna
(in
MstI
)
draw_track()
(in
LinearDrawer
)
dna
(in
BspDI
)
dna
(in
MteI
)
DrdI
(in
Bio.Restriction.Restriction
)
dna
(in
BspEI
)
dna
(in
MtuHN878II
)
DrdII
(in
Bio.Restriction.Restriction
)
dna
(in
BspFNI
)
dna
(in
MunI
)
DrdIV
(in
Bio.Restriction.Restriction
)
dna
(in
BspGI
)
dna
(in
Mva1269I
)
DriI
(in
Bio.Restriction.Restriction
)
dna
(in
BspHI
)
dna
(in
MvaI
)
dropoff_1st_pass()
(in
_ParametersConsumer
)
dna
(in
BspLI
)
dna
(in
MvnI
)
ds
(in
Bio.Sequencing.Ace
)
dna
(in
BspLU11I
)
dna
(in
MwoI
)
DsaI
(in
Bio.Restriction.Restriction
)
dna
(in
BspMAI
)
dna
(in
NaeI
)
DseDI
(in
Bio.Restriction.Restriction
)
dna
(in
BspMI
)
dna
(in
Nal45188II
)
DSSP
(in
Bio.PDB.DSSP'
)
dna
(in
BspMII
)
dna
(in
NarI
)
DSSP'
(in
Bio.PDB
)
dna
(in
BspNCI
)
dna
(in
Nbr128II
)
dssp_dict_from_pdb_file()
(in
Bio.PDB.DSSP'
)
dna
(in
BspOI
)
dna
(in
NciI
)
dumb_consensus()
(in
SummaryInfo
)
dna
(in
BspPI
)
dna
(in
NcoI
)
duplications()
(in
Writer
)
dna
(in
BspQI
)
dna
(in
NdeI
)
DvuIII
(in
Bio.Restriction.Restriction
)
dna
(in
BspT104I
)
dna
(in
NdeII
)
DynamicProgramming
(in
Bio.HMM
)
dna
(in
BspT107I
)
dna
(in
NgoAVII
)
dna
(in
BspTI
)
dna
(in
NgoAVIII
)
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