Package BioSQL :: Module BioSeq :: Class DBSeqRecord
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Class DBSeqRecord

source code

             object --+    
                      |    
Bio.SeqRecord.SeqRecord --+
                          |
                         DBSeqRecord

BioSQL equivalent of the Biopython SeqRecord object.
Instance Methods [hide private]
 
__init__(self, adaptor, primary_id)
Create a DBSeqRecord object.
source code
 
__get_seq(self) source code
 
__set_seq(self, seq) source code
 
__del_seq(self) source code
 
__get_dbxrefs(self) source code
 
__set_dbxrefs(self, dbxrefs) source code
 
__del_dbxrefs(self) source code
 
__get_features(self) source code
 
__set_features(self, features) source code
 
__del_features(self) source code
 
__get_annotations(self) source code
 
__set_annotations(self, annotations) source code
 
__del_annotations(self) source code

Inherited from Bio.SeqRecord.SeqRecord: __add__, __bool__, __contains__, __eq__, __format__, __ge__, __getitem__, __gt__, __iter__, __le___, __len__, __lt__, __ne__, __nonzero__, __radd__, __repr__, __str__, format, lower, reverse_complement, upper

Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __setattr__, __sizeof__, __subclasshook__

Properties [hide private]
  seq
Seq object
  dbxrefs
Database cross references
  features
Features
  annotations
Annotations

Inherited from Bio.SeqRecord.SeqRecord: letter_annotations

Inherited from object: __class__

Method Details [hide private]

__init__(self, adaptor, primary_id)
(Constructor)

source code 

Create a DBSeqRecord object.

Arguments:
  • adaptor - A BioSQL.BioSeqDatabase.Adaptor object
  • primary_id - An internal integer ID used by BioSQL

You wouldn't normally create a DBSeqRecord object yourself, this is done for you when using a BioSeqDatabase object

Overrides: object.__init__

Property Details [hide private]

seq

Seq object
Get Method:
__get_seq(self)
Set Method:
__set_seq(self, seq)
Delete Method:
__del_seq(self)

dbxrefs

Database cross references
Get Method:
__get_dbxrefs(self)
Set Method:
__set_dbxrefs(self, dbxrefs)
Delete Method:
__del_dbxrefs(self)

features

Features
Get Method:
__get_features(self)
Set Method:
__set_features(self, features)
Delete Method:
__del_features(self)

annotations

Annotations
Get Method:
__get_annotations(self)
Set Method:
__set_annotations(self, annotations)
Delete Method:
__del_annotations(self)