Bio.PDB.Entity.DisorderedEntityWrapper

Class DisorderedEntityWrapper

object --+ | DisorderedEntityWrapper

This class is a simple wrapper class that groups a number of equivalent Entities and forwards all method calls to one of them (the currently selected object). DisorderedResidue and DisorderedAtom are subclasses of this class. E.g.: A DisorderedAtom object contains a number of Atom objects, where each Atom object represents a specific position of a disordered atom in the structure.

Instance Methods

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__contains__(self, id)
True if the child has the given id.

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__getattr__(self, method)
Forward the method call to the selected child.

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__getitem__(self, id)
Return the child with the given id.

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__init__(self, id)
x.__init__(...) initializes x; see x.__class__.__doc__ for signature

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__iter__(self)
Return the number of children.

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__len__(self)
Return the number of children.

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__setitem__(self, id, child)
Add a child, associated with a certain id.

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__sub__(self, other)
Subtraction with another object.

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detach_parent(self)
Detach the parent

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disordered_add(self, child)
This is implemented by DisorderedAtom and DisorderedResidue.

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disordered_get(self, id=None)
Get the child object associated with id.

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disordered_get_id_list(self)
Return a list of id's.

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disordered_get_list(self)
Return list of children.

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disordered_has_id(self, id)
True if there is an object present associated with this id.

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disordered_select(self, id)
Select the object with given id as the currently active object.

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get_id(self)
Return the id.

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get_parent(self)
Return parent.

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is_disordered(self)
Return 2, indicating that this Entity is a collection of Entities.

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set_parent(self, parent)
Set the parent for the object and its children.

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Inherited from object: __delattr__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __str__

Properties

[hide private]

Inherited from object: __class__

init(self, id)
(Constructor)

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x.__init__(...) initializes x; see x.__class__.__doc__ for signature

Overrides: object.__init__: (inherited documentation)

disordered_get(self, id=None)

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Get the child object associated with id.

If id is None, the currently selected child is returned.

disordered_select(self, id)

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Select the object with given id as the currently active object.

Uncaught method calls are forwarded to the selected child object.

Class DisorderedEntityWrapper

__init__(self, id) (Constructor)

disordered_get(self, id=None)

disordered_select(self, id)

init(self, id)
(Constructor)