a
(in ColorSpiral) |
add_succ()
(in Node) |
AnnotatedChromosomeSegment
(in Bio.Graphics.BasicChromosome) |
aa1
(in Bio.PDB.Polypeptide) |
add_supplier()
(in RestrictionBatch) |
Annotation
(in Bio.Phylo.PhyloXML) |
aa3
(in Bio.PDB.Polypeptide) |
add_track()
(in Diagram) |
annotation()
(in Parser) |
AanI
(in Bio.Restriction.Restriction) |
add_wgs_scafld()
(in _FeatureConsumer) |
annotation()
(in Writer) |
AarI
(in Bio.Restriction.Restriction) |
add_wgs_scafld()
(in _RecordConsumer) |
annotations
(in DBSeqRecord) |
AasI
(in Bio.Restriction.Restriction) |
AdeI
(in Bio.Restriction.Restriction) |
anticonsensus
(in Motif) |
AatII
(in Bio.Restriction.Restriction) |
Adh6U21I
(in Bio.Restriction.Restriction) |
anticonsensus
(in GenericPositionMatrix) |
Aba6411II
(in Bio.Restriction.Restriction) |
af
(in Bio.Sequencing.Ace) |
Aod1I
(in Bio.Restriction.Restriction) |
AbaB8342IV
(in Bio.Restriction.Restriction) |
AfaI
(in Bio.Restriction.Restriction) |
Aor13HI
(in Bio.Restriction.Restriction) |
AbaCIII
(in Bio.Restriction.Restriction) |
AfeI
(in Bio.Restriction.Restriction) |
Aor51HI
(in Bio.Restriction.Restriction) |
AbaSI
(in Bio.Restriction.Restriction) |
affine_penalty
(in Bio.pairwise2) |
AoxI
(in Bio.Restriction.Restriction) |
AbaUMB2I
(in Bio.Restriction.Restriction) |
Affy
(in Bio) |
ApaBI
(in Bio.Restriction.Restriction) |
AbiIO
(in Bio.SeqIO) |
AfiI
(in Bio.Restriction.Restriction) |
ApaI
(in Bio.Restriction.Restriction) |
AbiIterator()
(in Bio.SeqIO.AbiIO) |
AflII
(in Bio.Restriction.Restriction) |
ApaLI
(in Bio.Restriction.Restriction) |
abs()
(in FSSPAlignDict) |
AflIII
(in Bio.Restriction.Restriction) |
ApeKI
(in Bio.Restriction.Restriction) |
abs_res_num
(in align) |
AfterPosition
(in Bio.SeqFeature) |
api_key
(in Bio.Entrez) |
AbsI
(in Bio.Restriction.Restriction) |
AgeI
(in Bio.Restriction.Restriction) |
ApoI
(in Bio.Restriction.Restriction) |
absorb()
(in QueryResult) |
AgsI
(in Bio.Restriction.Restriction) |
append()
(in MultipleSeqAlignment) |
AbstractAtomPropertyMap
(in Bio.PDB.AbstractPropertyMap) |
AhaIII
(in Bio.Restriction.Restriction) |
append()
(in Chain) |
AbstractCommandline
(in Bio.Application) |
AhdI
(in Bio.Restriction.Restriction) |
append()
(in SeqMap) |
AbstractConsumer
(in Bio.SearchIO._legacy.ParserSupport) |
AhlI
(in Bio.Restriction.Restriction) |
append()
(in Hit) |
AbstractCut
(in Bio.Restriction.Restriction) |
AhyRBAHI
(in Bio.Restriction.Restriction) |
append()
(in QueryResult) |
AbstractDPAlgorithms
(in Bio.HMM.DynamicProgramming) |
AhyYL17I
(in Bio.Restriction.Restriction) |
append()
(in MutableSeq) |
AbstractDrawer
(in Bio.Graphics.GenomeDiagram._AbstractDrawer) |
AjiI
(in Bio.Restriction.Restriction) |
append()
(in Alignment) |
AbstractParser
(in Bio.SearchIO._legacy.ParserSupport) |
AjnI
(in Bio.Restriction.Restriction) |
append()
(in AlignmentColumn) |
AbstractPosition
(in Bio.SeqFeature) |
AjuI
(in Bio.Restriction.Restriction) |
append_item()
(in DescriptionExt) |
AbstractPropertyMap
(in Bio.PDB) |
AleI
(in Bio.Restriction.Restriction) |
append_sets()
(in Nexus) |
AbstractPropertyMap
(in Bio.PDB.AbstractPropertyMap) |
AlfI
(in Bio.Restriction.Restriction) |
Application
(in Bio) |
AbstractResiduePropertyMap
(in Bio.PDB.AbstractPropertyMap) |
Align
(in Bio) |
ApplicationError
(in Bio.Application) |
AbstractTrainer
(in Bio.HMM.Trainer) |
align
(in Bio.FSSP.fssp_rec) |
Applications
(in Bio.Align) |
acc
(in align) |
align
(in Bio.pairwise2) |
Applications
(in Bio.Blast) |
Acc16I
(in Bio.Restriction.Restriction) |
align()
(in PairwiseAligner) |
Applications
(in Bio.Emboss) |
Acc36I
(in Bio.Restriction.Restriction) |
align()
(in _HSPConsumer) |
Applications
(in Bio.Phylo) |
Acc65I
(in Bio.Restriction.Restriction) |
align()
(in Bio.Wise) |
Applications
(in Bio.Sequencing) |
Acc65V
(in Bio.Restriction.Restriction) |
align()
(in Bio.Wise.dnal) |
applications
(in Bio.motifs) |
AccB1I
(in Bio.Restriction.Restriction) |
align()
(in Bio.Wise.psw) |
apply()
(in Superimposer) |
AccB7I
(in Bio.Restriction.Restriction) |
alignace
(in Bio.motifs) |
ApyPI
(in Bio.Restriction.Restriction) |
AccBSI
(in Bio.Restriction.Restriction) |
aligned
(in PairwiseAlignment) |
AquII
(in Bio.Restriction.Restriction) |
accept_atom()
(in ChainSelector) |
AlignInfo
(in Bio.Align) |
AquIII
(in Bio.Restriction.Restriction) |
accept_atom()
(in Select) |
AlignIO
(in Bio) |
AquIV
(in Bio.Restriction.Restriction) |
accept_chain()
(in ChainSelector) |
Alignment
(in Bio.Blast.Record) |
aromaticity()
(in ProteinAnalysis) |
accept_chain()
(in Select) |
Alignment
(in Bio.Wise.psw) |
Array
(in Bio.Align.substitution_matrices) |
accept_model()
(in ChainSelector) |
AlignmentColumn
(in Bio.Wise.psw) |
ArsI
(in Bio.Restriction.Restriction) |
accept_model()
(in Select) |
AlignmentColumnFullException
(in Bio.Wise.psw) |
artemis_color()
(in ColorTranslator) |
accept_residue()
(in ChainSelector) |
AlignmentHasDifferentLengthsError
(in Bio.CAPS) |
as_fasta()
(in Bio.SeqIO.FastaIO) |
accept_residue()
(in Select) |
AlignmentIterator
(in Bio.AlignIO.Interfaces) |
as_fasta_2line()
(in Bio.SeqIO.FastaIO) |
Accession
(in Bio.Phylo.PhyloXML) |
alignments_rec
(in Bio.FSSP) |
as_fastq()
(in Bio.SeqIO.QualityIO) |
accession()
(in _FeatureConsumer) |
alignments_title
(in Bio.FSSP) |
as_fastq_illumina()
(in Bio.SeqIO.QualityIO) |
accession()
(in _RecordConsumer) |
AlignmentWriter
(in Bio.AlignIO.Interfaces) |
as_fastq_solexa()
(in Bio.SeqIO.QualityIO) |
accession()
(in Parser) |
all_get_indices()
(in KDTree) |
as_handle()
(in Bio.File) |
accession()
(in Writer) |
all_get_radii()
(in KDTree) |
as_phyloxml()
(in Tree) |
AccI
(in Bio.Restriction.Restriction) |
all_ids()
(in Chain) |
as_phyloxml()
(in Phylogeny) |
AccII
(in Bio.Restriction.Restriction) |
all_pairs()
(in Bio.Wise) |
as_qual()
(in Bio.SeqIO.QualityIO) |
AccIII
(in Bio.Restriction.Restriction) |
all_search()
(in KDTree) |
as_string()
(in Bio.Phylo.BaseTree) |
ACCREP
(in Bio.SubsMat) |
all_suppliers()
(in AbstractCut) |
as_string()
(in RestrictionBatch) |
Ace
(in Bio.Sequencing) |
AllEnzymes
(in Bio.Restriction.Restriction) |
as_tab()
(in Bio.SeqIO.TabIO) |
ACEFileRecord
(in Bio.Sequencing.Ace) |
allitems()
(in Bio.SearchIO._utils) |
AscI
(in Bio.Restriction.Restriction) |
AceIII
(in Bio.Restriction.Restriction) |
allow_all_transitions()
(in MarkovModelBuilder) |
AseI
(in Bio.Restriction.Restriction) |
AceIO
(in Bio.SeqIO) |
allow_transition()
(in MarkovModelBuilder) |
Asi256I
(in Bio.Restriction.Restriction) |
AceIterator()
(in Bio.SeqIO.AceIO) |
aln
(in HSP) |
AsiGI
(in Bio.Restriction.Restriction) |
AchA6III
(in Bio.Restriction.Restriction) |
aln
(in HSPFragment) |
AsiSI
(in Bio.Restriction.Restriction) |
AciI
(in Bio.Restriction.Restriction) |
aln_all
(in HSP) |
Asp103I
(in Bio.Restriction.Restriction) |
AclI
(in Bio.Restriction.Restriction) |
aln_annotation
(in HSP) |
Asp114pII
(in Bio.Restriction.Restriction) |
AclWI
(in Bio.Restriction.Restriction) |
aln_annotation_all
(in HSP) |
Asp700I
(in Bio.Restriction.Restriction) |
Aco12261II
(in Bio.Restriction.Restriction) |
aln_span
(in HSP) |
Asp718I
(in Bio.Restriction.Restriction) |
AcoI
(in Bio.Restriction.Restriction) |
aln_span
(in HSPFragment) |
AspA2I
(in Bio.Restriction.Restriction) |
AcoY31II
(in Bio.Restriction.Restriction) |
AloI
(in Bio.Restriction.Restriction) |
AspBHI
(in Bio.Restriction.Restriction) |
AcsI
(in Bio.Restriction.Restriction) |
alphabet
(in Array) |
AspDUT2V
(in Bio.Restriction.Restriction) |
AcuI
(in Bio.Restriction.Restriction) |
Alphabet
(in Bio) |
AspJHL3II
(in Bio.Restriction.Restriction) |
AcvI
(in Bio.Restriction.Restriction) |
Alphabet
(in Bio.Alphabet) |
AspLEI
(in Bio.Restriction.Restriction) |
AcyI
(in Bio.Restriction.Restriction) |
alphabet
(in HSP) |
AspNIH4III
(in Bio.Restriction.Restriction) |
adam_consensus()
(in Bio.Phylo.Consensus) |
alphabet
(in HSPFragment) |
AspS9I
(in Bio.Restriction.Restriction) |
Adaptor
(in BioSQL.BioSeqDatabase) |
AlphabetEncoder
(in Bio.Alphabet) |
AspSLV7III
(in Bio.Restriction.Restriction) |
add()
(in _ChromosomeComponent) |
alphabets
(in Sequence) |
Astral
(in Bio.SCOP) |
add()
(in StepMatrix) |
alt()
(in Writer) |
astralBibIds
(in Bio.SCOP) |
add()
(in Chain) |
AluBI
(in Bio.Restriction.Restriction) |
astralEv_to_file
(in Bio.SCOP) |
add()
(in Entity) |
AluI
(in Bio.Restriction.Restriction) |
astralEv_to_sql
(in Bio.SCOP) |
add()
(in DisorderedResidue) |
Alw21I
(in Bio.Restriction.Restriction) |
astralEvs
(in Bio.SCOP) |
add()
(in Residue) |
Alw26I
(in Bio.Restriction.Restriction) |
Asu14238IV
(in Bio.Restriction.Restriction) |
add()
(in RestrictionBatch) |
Alw44I
(in Bio.Restriction.Restriction) |
AsuC2I
(in Bio.Restriction.Restriction) |
add_align_list()
(in FSSPAlignRec) |
AlwFI
(in Bio.Restriction.Restriction) |
AsuHPI
(in Bio.Restriction.Restriction) |
add_annotation()
(in Parser) |
AlwI
(in Bio.Restriction.Restriction) |
AsuI
(in Bio.Restriction.Restriction) |
add_buffer_protocol_flag()
(in Bio.Align._aligners) |
AlwNI
(in Bio.Restriction.Restriction) |
AsuII
(in Bio.Restriction.Restriction) |
add_component()
(in Entry) |
Ama87I
(in Bio.Restriction.Restriction) |
AsuNHI
(in Bio.Restriction.Restriction) |
add_count()
(in ChromosomeCounts) |
AmaCSI
(in Bio.Restriction.Restriction) |
AteTI
(in Bio.Restriction.Restriction) |
add_edge()
(in Graph) |
Ambiguous
(in Bio.Restriction.Restriction) |
Atom
(in Bio.PDB) |
add_edge()
(in MultiGraph) |
ambiguous_dna
(in Bio.Alphabet.IUPAC) |
Atom
(in Bio.PDB.Atom) |
add_entry()
(in BlastTableRec) |
ambiguous_dna_by_id
(in Bio.Data.CodonTable) |
atom_weights
(in Bio.Data.IUPACData) |
add_entry()
(in Pathway) |
ambiguous_dna_by_name
(in Bio.Data.CodonTable) |
atom_weights
(in Bio.PDB.PDBIO') |
add_feature()
(in FeatureSet) |
ambiguous_dna_complement
(in Bio.Data.IUPACData) |
AtomIterator()
(in Bio.SeqIO.PdbIO) |
add_graphics()
(in Entry) |
ambiguous_dna_letters
(in Bio.Data.IUPACData) |
attempt_read_and_call()
(in Bio.SearchIO._legacy.ParserSupport) |
add_interaction()
(in Network) |
ambiguous_dna_values
(in Bio.Data.IUPACData) |
authors()
(in _FeatureConsumer) |
add_label()
(in ChromosomeCounts) |
ambiguous_dna_weight_ranges
(in Bio.Data.IUPACData) |
authors()
(in _RecordConsumer) |
add_nocheck()
(in RestrictionBatch) |
ambiguous_generic_by_id
(in Bio.Data.CodonTable) |
autocommit()
(in Adaptor) |
add_node()
(in Graph) |
ambiguous_generic_by_name
(in Bio.Data.CodonTable) |
autocommit()
(in Generic_dbutils) |
add_node()
(in MultiGraph) |
ambiguous_rna
(in Bio.Alphabet.IUPAC) |
autocommit()
(in Pgdb_dbutils) |
add_point()
(in GraphData) |
ambiguous_rna_by_id
(in Bio.Data.CodonTable) |
autocommit()
(in Psycopg2_dbutils) |
add_primer_set()
(in InputRecord) |
ambiguous_rna_by_name
(in Bio.Data.CodonTable) |
AvaI
(in Bio.Restriction.Restriction) |
add_product()
(in Reaction) |
ambiguous_rna_complement
(in Bio.Data.IUPACData) |
AvaII
(in Bio.Restriction.Restriction) |
add_reaction()
(in Pathway) |
ambiguous_rna_letters
(in Bio.Data.IUPACData) |
AvaIII
(in Bio.Restriction.Restriction) |
add_reaction()
(in System) |
ambiguous_rna_values
(in Bio.Data.IUPACData) |
available_matrices
(in Bio.SubsMat.MatrixInfo) |
add_relation()
(in Pathway) |
ambiguous_rna_weight_ranges
(in Bio.Data.IUPACData) |
avg_ambiguous_dna_weights
(in Bio.Data.IUPACData) |
add_residue()
(in Fragment) |
AmbiguousCodonTable
(in Bio.Data.CodonTable) |
avg_ambiguous_rna_weights
(in Bio.Data.IUPACData) |
add_sequence()
(in MultipleSeqAlignment) |
AmbiguousForwardTable
(in Bio.Data.CodonTable) |
avg_extended_protein_weights
(in Bio.Data.IUPACData) |
add_sequence()
(in Nexus) |
Amplifier
(in Bio.Emboss.PrimerSearch) |
AvrII
(in Bio.Restriction.Restriction) |
add_set()
(in Track) |
Analysis
(in Bio.Restriction.Restriction) |
Awo1030IV
(in Bio.Restriction.Restriction) |
add_species()
(in Network) |
angle()
(in Vector) |
AxyI
(in Bio.Restriction.Restriction) |
add_stmt_to_handle()
(in Writer) |
angle2trig()
(in Bio.Graphics.GenomeDiagram._AbstractDrawer) |
|
add_substrate()
(in Reaction) |
annotate()
(in Bio.PDB.PSEA) |
|