Package Bio :: Package Data :: Module IUPACData
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Module IUPACData

source code

Functions [hide private]
 
_make_ranges(mydict) source code
 
_make_ambiguous_ranges(mydict, weight_table) source code
Variables [hide private]
  protein_letters = 'ACDEFGHIKLMNPQRSTVWY'
  extended_protein_letters = 'ACDEFGHIKLMNPQRSTVWYBXZJUO'
  protein_letters_1to3 = {'A': 'Ala', 'C': 'Cys', 'D': 'Asp', 'E...
  protein_letters_1to3_extended = {'A': 'Ala', 'B': 'Asx', 'C': ...
  protein_letters_3to1 = {'Ala': 'A', 'Arg': 'R', 'Asn': 'N', 'A...
  protein_letters_3to1_extended = {'Ala': 'A', 'Arg': 'R', 'Asn'...
  ambiguous_dna_letters = 'GATCRYWSMKHBVDN'
  unambiguous_dna_letters = 'GATC'
  ambiguous_rna_letters = 'GAUCRYWSMKHBVDN'
  unambiguous_rna_letters = 'GAUC'
  extended_dna_letters = 'GATCBDSW'
  ambiguous_dna_values = {'A': 'A', 'B': 'CGT', 'C': 'C', 'D': '...
  ambiguous_rna_values = {'A': 'A', 'B': 'CGU', 'C': 'C', 'D': '...
  ambiguous_dna_complement = {'A': 'T', 'B': 'V', 'C': 'G', 'D':...
  ambiguous_rna_complement = {'A': 'U', 'B': 'V', 'C': 'G', 'D':...
  unambiguous_dna_weights = {'A': 331.2218, 'C': 307.1971, 'G': ...
  monoisotopic_unambiguous_dna_weights = {'A': 331.06817, 'C': 3...
  unambiguous_dna_weight_ranges = {'A': (331.2218, 331.2218), 'C...
  unambiguous_rna_weights = {'A': 347.2212, 'C': 323.1965, 'G': ...
  monoisotopic_unambiguous_rna_weights = {'A': 347.063084, 'C': ...
  unambiguous_rna_weight_ranges = {'A': (347.2212, 347.2212), 'C...
  protein_weights = {'A': 89.0932, 'C': 121.1582, 'D': 133.1027,...
  monoisotopic_protein_weights = {'A': 89.047678, 'C': 121.01974...
  extended_protein_values = {'A': 'A', 'B': 'ND', 'C': 'C', 'D':...
  protein_weight_ranges = {'A': (89.0932, 89.0932), 'C': (121.15...
  atom_weights = {'Ac': 227.03, 'Ag': 107.8682, 'Al': 26.981538,...
  __package__ = None
hash(x)
  ambiguous_dna_weight_ranges = {'A': (331.2218, 331.2218), 'B':...
  ambiguous_rna_weight_ranges = {'A': (347.2212, 347.2212), 'B':...
  avg_ambiguous_dna_weights = {'A': 331.2218, 'B': 325.542266667...
  avg_ambiguous_rna_weights = {'A': 347.2212, 'B': 336.866133333...
  avg_extended_protein_weights = {'A': 89.0932, 'B': 132.6103, '...
  extended_protein_weight_ranges = {'A': (89.0932, 89.0932), 'B'...
Variables Details [hide private]

protein_letters_1to3

Value:
{'A': 'Ala',
 'C': 'Cys',
 'D': 'Asp',
 'E': 'Glu',
 'F': 'Phe',
 'G': 'Gly',
 'H': 'His',
 'I': 'Ile',
...

protein_letters_1to3_extended

Value:
{'A': 'Ala',
 'B': 'Asx',
 'C': 'Cys',
 'D': 'Asp',
 'E': 'Glu',
 'F': 'Phe',
 'G': 'Gly',
 'H': 'His',
...

protein_letters_3to1

Value:
{'Ala': 'A',
 'Arg': 'R',
 'Asn': 'N',
 'Asp': 'D',
 'Cys': 'C',
 'Gln': 'Q',
 'Glu': 'E',
 'Gly': 'G',
...

protein_letters_3to1_extended

Value:
{'Ala': 'A',
 'Arg': 'R',
 'Asn': 'N',
 'Asp': 'D',
 'Asx': 'B',
 'Cys': 'C',
 'Gln': 'Q',
 'Glu': 'E',
...

ambiguous_dna_values

Value:
{'A': 'A',
 'B': 'CGT',
 'C': 'C',
 'D': 'AGT',
 'G': 'G',
 'H': 'ACT',
 'K': 'GT',
 'M': 'AC',
...

ambiguous_rna_values

Value:
{'A': 'A',
 'B': 'CGU',
 'C': 'C',
 'D': 'AGU',
 'G': 'G',
 'H': 'ACU',
 'K': 'GU',
 'M': 'AC',
...

ambiguous_dna_complement

Value:
{'A': 'T',
 'B': 'V',
 'C': 'G',
 'D': 'H',
 'G': 'C',
 'H': 'D',
 'K': 'M',
 'M': 'K',
...

ambiguous_rna_complement

Value:
{'A': 'U',
 'B': 'V',
 'C': 'G',
 'D': 'H',
 'G': 'C',
 'H': 'D',
 'K': 'M',
 'M': 'K',
...

unambiguous_dna_weights

Value:
{'A': 331.2218, 'C': 307.1971, 'G': 347.2212, 'T': 322.2085}

monoisotopic_unambiguous_dna_weights

Value:
{'A': 331.06817, 'C': 307.056936, 'G': 347.063084, 'T': 322.056602}

unambiguous_dna_weight_ranges

Value:
{'A': (331.2218, 331.2218),
 'C': (307.1971, 307.1971),
 'G': (347.2212, 347.2212),
 'T': (322.2085, 322.2085)}

unambiguous_rna_weights

Value:
{'A': 347.2212, 'C': 323.1965, 'G': 363.2206, 'U': 324.1813}

monoisotopic_unambiguous_rna_weights

Value:
{'A': 347.063084, 'C': 323.051851, 'G': 363.057999, 'U': 324.035867}

unambiguous_rna_weight_ranges

Value:
{'A': (347.2212, 347.2212),
 'C': (323.1965, 323.1965),
 'G': (363.2206, 363.2206),
 'U': (324.1813, 324.1813)}

protein_weights

Value:
{'A': 89.0932,
 'C': 121.1582,
 'D': 133.1027,
 'E': 147.1293,
 'F': 165.1891,
 'G': 75.0666,
 'H': 155.1546,
 'I': 131.1729,
...

monoisotopic_protein_weights

Value:
{'A': 89.047678,
 'C': 121.019749,
 'D': 133.037508,
 'E': 147.053158,
 'F': 165.078979,
 'G': 75.032028,
 'H': 155.069477,
 'I': 131.094629,
...

extended_protein_values

Value:
{'A': 'A',
 'B': 'ND',
 'C': 'C',
 'D': 'D',
 'E': 'E',
 'F': 'F',
 'G': 'G',
 'H': 'H',
...

protein_weight_ranges

Value:
{'A': (89.0932, 89.0932),
 'C': (121.1582, 121.1582),
 'D': (133.1027, 133.1027),
 'E': (147.1293, 147.1293),
 'F': (165.1891, 165.1891),
 'G': (75.0666, 75.0666),
 'H': (155.1546, 155.1546),
 'I': (131.1729, 131.1729),
...

atom_weights

Value:
{'Ac': 227.03,
 'Ag': 107.8682,
 'Al': 26.981538,
 'Am': 243.06,
 'Ar': 39.948,
 'As': 74.9216,
 'At': 209.99,
 'Au': 196.96655,
...

ambiguous_dna_weight_ranges

Value:
{'A': (331.2218, 331.2218),
 'B': (307.1971, 347.2212),
 'C': (307.1971, 307.1971),
 'D': (322.2085, 347.2212),
 'G': (347.2212, 347.2212),
 'H': (307.1971, 331.2218),
 'K': (322.2085, 347.2212),
 'M': (307.1971, 331.2218),
...

ambiguous_rna_weight_ranges

Value:
{'A': (347.2212, 347.2212),
 'B': (323.1965, 363.2206),
 'C': (323.1965, 323.1965),
 'D': (324.1813, 363.2206),
 'G': (363.2206, 363.2206),
 'H': (323.1965, 347.2212),
 'K': (324.1813, 363.2206),
 'M': (323.1965, 347.2212),
...

avg_ambiguous_dna_weights

Value:
{'A': 331.2218,
 'B': 325.542266667,
 'C': 307.1971,
 'D': 333.5505,
 'G': 347.2212,
 'H': 320.209133333,
 'K': 334.71485,
 'M': 319.20945,
...

avg_ambiguous_rna_weights

Value:
{'A': 347.2212,
 'B': 336.866133333,
 'C': 323.1965,
 'D': 344.874366667,
 'G': 363.2206,
 'H': 331.533,
 'K': 343.70095,
 'M': 335.20885,
...

avg_extended_protein_weights

Value:
{'A': 89.0932,
 'B': 132.6103,
 'C': 121.1582,
 'D': 133.1027,
 'E': 147.1293,
 'F': 165.1891,
 'G': 75.0666,
 'H': 155.1546,
...

extended_protein_weight_ranges

Value:
{'A': (89.0932, 89.0932),
 'B': (132.1179, 133.1027),
 'C': (121.1582, 121.1582),
 'D': (133.1027, 133.1027),
 'E': (147.1293, 147.1293),
 'F': (165.1891, 165.1891),
 'G': (75.0666, 75.0666),
 'H': (155.1546, 155.1546),
...