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Definitions for interacting with BLAST related applications.
Wrappers for the new NCBI BLAST+ tools (written in C++):
- NcbiblastpCommandline - Protein-Protein BLAST
- NcbiblastnCommandline - Nucleotide-Nucleotide BLAST
- NcbiblastxCommandline - Translated Query-Protein Subject BLAST
- NcbitblastnCommandline - Protein Query-Translated Subject BLAST
- NcbitblastxCommandline - Translated Query-Protein Subject BLAST
- NcbipsiblastCommandline - Position-Specific Initiated BLAST
- NcbirpsblastCommandline - Reverse Position Specific BLAST
- NcbirpstblastnCommandline - Translated Reverse Position Specific BLAST
- NcbideltablastCommandline - Protein-Protein domain enhanced lookup time accelerated blast
- NcbiblastformatterCommandline - Convert ASN.1 to other BLAST output formats
For further details, see:
Camacho et al. BLAST+: architecture and applications BMC Bioinformatics 2009, 10:421 https://doi.org/10.1186/1471-2105-10-421
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_NcbibaseblastCommandline Base Commandline object for (new) NCBI BLAST+ wrappers (PRIVATE). |
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_NcbiblastCommandline Base Commandline object for (new) NCBI BLAST+ wrappers (PRIVATE). |
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_Ncbiblast2SeqCommandline Base Commandline object for (new) NCBI BLAST+ wrappers (PRIVATE). |
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_NcbiblastMain2SeqCommandline Base Commandline object for (new) NCBI BLAST+ wrappers (PRIVATE). |
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NcbiblastpCommandline Create a commandline for the NCBI BLAST+ program blastp (for proteins). |
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NcbiblastnCommandline Wrapper for the NCBI BLAST+ program blastn (for nucleotides). |
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NcbiblastxCommandline Wrapper for the NCBI BLAST+ program blastx (nucleotide query, protein database). |
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NcbitblastnCommandline Wrapper for the NCBI BLAST+ program tblastn. |
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NcbitblastxCommandline Wrapper for the NCBI BLAST+ program tblastx. |
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NcbipsiblastCommandline Wrapper for the NCBI BLAST+ program psiblast. |
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NcbirpsblastCommandline Wrapper for the NCBI BLAST+ program rpsblast. |
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NcbirpstblastnCommandline Wrapper for the NCBI BLAST+ program rpstblastn. |
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NcbiblastformatterCommandline Wrapper for the NCBI BLAST+ program blast_formatter. |
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NcbideltablastCommandline Create a commandline for the NCBI BLAST+ program deltablast (for proteins). |
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