Module Applications

source code

Definitions for interacting with BLAST related applications.

Obsolete wrappers for the old/classic NCBI BLAST tools (written in C):

- FastacmdCommandline
- BlastallCommandline
- BlastpgpCommandline
- RpsBlastCommandline

Wrappers for the new NCBI BLAST+ tools (written in C++):

- NcbiblastpCommandline - Protein-Protein BLAST
- NcbiblastnCommandline - Nucleotide-Nucleotide BLAST
- NcbiblastxCommandline - Translated Query-Protein Subject BLAST
- NcbitblastnCommandline - Protein Query-Translated Subject BLAST
- NcbitblastxCommandline - Translated Query-Protein Subject BLAST
- NcbipsiblastCommandline - Position-Specific Initiated BLAST
- NcbirpsblastCommandline - Reverse Position Specific BLAST
- NcbirpstblastnCommandline - Translated Reverse Position Specific BLAST
- NcbiblastformatterCommandline - Convert ASN.1 to other BLAST output formats

For further details, see:

Camacho et al. BLAST+: architecture and applications
BMC Bioinformatics 2009, 10:421
doi:10.1186/1471-2105-10-421