Module Applications

source code

Definitions for interacting with BLAST related applications.

Wrappers for the new NCBI BLAST+ tools (written in C++):

• NcbiblastpCommandline - Protein-Protein BLAST
• NcbiblastnCommandline - Nucleotide-Nucleotide BLAST
• NcbiblastxCommandline - Translated Query-Protein Subject BLAST
• NcbitblastnCommandline - Protein Query-Translated Subject BLAST
• NcbitblastxCommandline - Translated Query-Protein Subject BLAST
• NcbipsiblastCommandline - Position-Specific Initiated BLAST
• NcbirpsblastCommandline - Reverse Position Specific BLAST
• NcbirpstblastnCommandline - Translated Reverse Position Specific BLAST
• NcbideltablastCommandline - Protein-Protein domain enhanced lookup time accelerated blast
• NcbiblastformatterCommandline - Convert ASN.1 to other BLAST output formats

For further details, see:

Camacho et al. BLAST+: architecture and applications BMC Bioinformatics 2009, 10:421 doi:10.1186/1471-2105-10-421