Package Bio :: Package Phylo :: Module CDAOIO :: Class Writer
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Class Writer

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object --+

Based on the writer in Bio.Nexus.Trees (str, to_string).
Instance Methods [hide private]
__init__(self, trees)
Initialize parameters for writing a CDAO tree.
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write(self, handle, tree_uri='', record_complete_ancestry=False, rooted=False, **kwargs)
Write this instance's trees to a file handle.
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add_stmt_to_handle(self, handle, stmt)
Add URI prefix to handle.
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process_clade(self, clade, parent=None, root=False)
Recursively generate triples describing a tree of clades.
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Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Class Variables [hide private]
  prefixes = {'cdao': ''...
Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, trees)

source code 
Initialize parameters for writing a CDAO tree.
Overrides: object.__init__

Class Variable Details [hide private]


{'cdao': '',
 'obo': '',
 'owl': '',
 'rdf': '',
 'rdfs': ''}