Package Bio :: Package HMM :: Module Trainer
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Module Trainer

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Provide trainers which estimate parameters based on training sequences.

These should be used to 'train' a Markov Model prior to actually using it to decode state paths. When supplied training sequences and a model to work from, these classes will estimate parameters of the model.

This aims to estimate two parameters:

Classes [hide private]
  TrainingSequence
Hold a training sequence with emissions and optionally, a state path.
  AbstractTrainer
Provide generic functionality needed in all trainers.
  BaumWelchTrainer
Trainer that uses the Baum-Welch algorithm to estimate parameters.
  KnownStateTrainer
Estimate probabilities with known state sequences.
Variables [hide private]
  __package__ = 'Bio.HMM'