Package Bio :: Module pairwise2 :: Class affine_penalty
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Class affine_penalty

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object --+
         |
        affine_penalty

Create a gap function for use in an alignment.
Instance Methods [hide private]
 
__init__(self, open, extend, penalize_extend_when_opening=0)
Initialize the class.
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__call__(self, index, length)
Call a gap function instance already created.
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Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, open, extend, penalize_extend_when_opening=0)
(Constructor)

source code 
Initialize the class.
Overrides: object.__init__