Package Bio :: Module pairwise2 :: Class affine_penalty
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Class affine_penalty

source code

object --+
         |
        affine_penalty

affine_penalty(open, extend[, penalize_extend_when_opening]) -> gap_fn

Create a gap function for use in an alignment.

Instance Methods [hide private]
gap_fn
__init__(open, extend, penalize_extend_when_opening=...)
x.__init__(...) initializes x; see x.__class__.__doc__ for signature
source code
 
__call__(self, index, length) source code

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(open, extend, penalize_extend_when_opening=...)
(Constructor)

source code 
x.__init__(...) initializes x; see x.__class__.__doc__ for signature

Returns: gap_fn
Overrides: object.__init__
(inherited documentation)