Package Bio :: Package Alphabet :: Class Alphabet

Class Alphabet

object --+
         |
        Alphabet

Known Subclasses:

Instance Methods

[hide private]

__repr__(self)
repr(x)

source code

contains(self, other)
Does this alphabet 'contain' the other (OBSOLETE?).

source code

_case_less(self)
Return an case-less variant of the current alphabet (PRIVATE).

source code

_upper(self)
Return an upper case variant of the current alphabet (PRIVATE).

source code

_lower(self)
Return a lower case variant of the current alphabet (PRIVATE).

source code

Inherited from object: __delattr__, __getattribute__, __hash__, __init__, __new__, __reduce__, __reduce_ex__, __setattr__, __str__

Class Variables

[hide private]

size = None

letters = None

Properties

[hide private]

Inherited from object: __class__

Method Details

[hide private]

repr(self)
(Representation operator)

source code

repr(x)

Overrides: object.__repr__: (inherited documentation)

contains(self, other)

source code

Does this alphabet 'contain' the other (OBSOLETE?).

Returns a boolean.  This relies on the Alphabet subclassing
hierarchy only, and does not check the letters property.
This isn't ideal, and doesn't seem to work as intended
with the AlphabetEncoder classes.

Class Alphabet

__repr__(self) (Representation operator)

contains(self, other)

repr(self)
(Representation operator)