Package Bio :: Package HMM :: Module Trainer :: Class TrainingSequence
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Class TrainingSequence

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object --+
         |
        TrainingSequence

Hold a training sequence with emissions and optionally, a state path.
Instance Methods [hide private]
 
__init__(self, emissions, state_path)
Initialize a training sequence.
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Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __repr__, __setattr__, __sizeof__, __str__, __subclasshook__

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, emissions, state_path)
(Constructor)

source code 

Initialize a training sequence.

Arguments:

o emissions - A Seq object containing the sequence of emissions in the training sequence, and the alphabet of the sequence.

o state_path - A Seq object containing the sequence of states and the alphabet of the states. If there is no known state path, then the sequence of states should be an empty string.

Overrides: object.__init__