Package Bio :: Package KEGG :: Package Enzyme

Package Enzyme


This module provides code to work with the KEGG Enzyme database.

Functions:
parse - Returns an iterator giving Record objects.

Classes:
Record               -- Holds the information from a KEGG Enzyme record.

Classes

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Record
Holds info from a KEGG Enzyme record.

Functions

[hide private]

id_wrap(indent)

source code

struct_wrap(indent)

source code

parse(handle)
Parse a KEGG Enzyme file, returning Record objects.

source code

Variables

[hide private]

rxn_wrap = [0, '', (' + ', '', 1, 1), (' = ', '', 1, 1), (' ',...

name_wrap = [0, '', (' ', '$', 1, 1), ('-', '$', 1, 1)]

Function Details

[hide private]

parse(handle)

source code

Parse a KEGG Enzyme file, returning Record objects.

This is an iterator function, typically used in a for loop.  For
example, using one of the example KEGG files in the Biopython
test suite,

>>> handle = open("KEGG/enzyme.sample")
>>> for record in parse(handle):
...     print record.entry, record.name[0]
...
1.1.1.1 Alcohol dehydrogenase
1.1.1.62 Estradiol 17beta-dehydrogenase
1.1.1.68 Transferred to EC 1.7.99.5
1.6.5.3 NADH dehydrogenase (ubiquinone)
1.14.13.28 3,9-Dihydroxypterocarpan 6a-monooxygenase
2.4.1.68 Glycoprotein 6-alpha-L-fucosyltransferase
3.1.1.6 Acetylesterase
2.7.2.1 Acetate kinase

Variables Details

[hide private]

rxn_wrap

Value:

[0,
 '',
 (' + ', '', 1, 1),
 (' = ', '', 1, 1),
 (' ', '$', 1, 1),
 ('-', '$', 1, 1)]