Package Bio :: Package Phylo :: Package Applications :: Module _Phyml :: Class PhymlCommandline
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Class PhymlCommandline

source code

                     object --+    
Application.AbstractCommandline --+

Command-line wrapper for the tree inference program PhyML.



Guindon S, Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic Biology, 2003 Oct;52(5):696-704. PubMed PMID: 14530136.

Guindon S, Dufayard JF, Lefort V, Anisimova M, Hordijk W, Gascuel O. New Algorithms and Methods to Estimate Maximum-Likelihood Phylogenies: Assessing the Performance of PhyML 3.0. Systematic Biology, 2010 59(3):307-21.

Instance Methods [hide private]
__init__(self, cmd='phyml', **kwargs)
Initialize the class.
source code

Inherited from Application.AbstractCommandline: __call__, __repr__, __setattr__, __str__, set_parameter

Inherited from object: __delattr__, __format__, __getattribute__, __hash__, __new__, __reduce__, __reduce_ex__, __sizeof__, __subclasshook__

Class Variables [hide private]

Inherited from Application.AbstractCommandline: parameters

Properties [hide private]

Inherited from object: __class__

Method Details [hide private]

__init__(self, cmd='phyml', **kwargs)

source code 
Initialize the class.
Overrides: object.__init__