Package Bio :: Package Restriction
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Package Restriction

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Restriction Digest Enzymes.

Example:

>>> from Rana.fts import fts    #
>>> from Rana.Vector import *   # Just a way to get a sequence.
>>> from Bio.Seq import Seq     # Use your prefered method here.
>>> pbr = fts(pBR322)           #
>>> seq = Seq(str(pbr))         #
>>>
>>> from Bio.Restriction import *
>>> a = Analysis(AllEnzymes, seq, linear=False)
>>> b = a.blunt()
>>> a.print_that()              # no argument -> print all the results
AasI       :  2169, 2582.
AatII      :  4289.
Acc16I     :  263, 1359, 1457, 3589.
...
More enzymes here.
...
>>> b = a.without_site()
>>> a.print_that(b)  # Enzymes which do not cut pBR322
AarI      AatI      Acc65I    AcsI      AcvI      AdeI      AflII     AgeI
AhlI      AleI      AloI      ApaI      ApoI      AscI      AsiAI     AsiSI
Asp718I   AspA2I    AsuII     AvaIII    AvrII     AxyI      BaeI      BbrPI
BbvCI     BclI      BcuI      BfrBI     BfrI      BglII     BlnI      BlpI
BmgBI     BmgI      BplI      Bpu1102I  Bpu14I    BsaXI     Bse21I    BsePI
BseRI     BshTI     BsiWI     Bsp119I   Bsp120I   Bsp1407I  Bsp1720I  Bsp19I
BspT104I  BspTI     BsrGI     BssHI     BssHII    Bst98I    BstAUI    BstBI
BstEII    BstPI     BstSNI    BstXI     Bsu36I    BtrI      CciNI     CelII
Cfr42I    Cfr9I     CpoI      Csp45I    CspAI     CspCI     CspI      DraIII
DrdII     Ecl136II  Eco105I   Eco147I   Eco72I    Eco81I    Eco91I    EcoICRI
EcoO65I   EcoRI     EcoT22I   EspI      FalI      FbaI      FseI      FunII
HpaI      KpnI      Ksp22I    KspAI     KspI      MabI      MfeI      MluI
Mph1103I  MspCI     MssI      MunI      NcoI      NotI      NsiI      NspV
OliI      PacI      PaeR7I    PasI      PauI      PceI      Pfl23II   PinAI
PmaCI     PmeI      PmlI      Ppu10I    PsiI      Psp124BI  PspAI     PspCI
PspEI     PspLI     PspOMI    PspXI     PsrI      RleAI     Rsr2I     RsrII
SacI      SacII     SanDI     SauI      SbfI      SciI      SdaI      SexAI
SfiI      Sfr274I   Sfr303I   SfuI      SgfI      SgrBI     SlaI      SmaI
SmiI      SnaBI     SpeI      SplI      SrfI      Sse232I   Sse8387I  Sse8647I
SseBI     SspBI     SstI      StuI      SunI      SwaI      TliI      UthSI
Vha464I   XapI      XbaI      XcmI      XhoI      XmaCI     XmaI      XmaJI
Zsp2I
Submodules [hide private]

Variables [hide private]
  __package__ = 'Bio.Restriction'