Package Bio :: Package PDB :: Module NACCESS
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Module NACCESS

source code

Interface for the program NACCESS.

See: http://wolf.bms.umist.ac.uk/naccess/

errors likely to occur with the binary:
default values are often due to low default settings in accall.pars
- e.g. max cubes error: change in accall.pars and recompile binary

use naccess -y, naccess -h or naccess -w to include HETATM records

Classes [hide private]
  NACCESS
  NACCESS_atomic
Functions [hide private]
 
run_naccess(model, pdb_file, probe_size=None, z_slice=None, naccess='naccess', temp_path='/tmp/') source code
 
process_rsa_data(rsa_data) source code
 
process_asa_data(rsa_data) source code
Variables [hide private]
  __package__ = 'Bio.PDB'