Bio.SearchIO.HmmerIO.hmmer3_text module
Bio.SearchIO parser for HMMER plain text output format.
- class Bio.SearchIO.HmmerIO.hmmer3_text.Hmmer3TextParser(handle)
Bases:
object
Parser for the HMMER 3.0 text output.
- __init__(handle)
Initialize the class.
- __iter__()
Iterate over query results.
- class Bio.SearchIO.HmmerIO.hmmer3_text.Hmmer3TextIndexer(*args, **kwargs)
Bases:
_BaseHmmerTextIndexer
Indexer class for HMMER plain text output.
- qresult_start = b'Query: '
- qresult_end = b'//'
- __iter__()
Iterate over Hmmer3TextIndexer; yields query results’ key, offsets, 0.
- __abstractmethods__ = frozenset({})