Bio.HMM package
Submodules
- Bio.HMM.DynamicProgramming module
- Bio.HMM.MarkovModel module
MarkovModelBuilder
MarkovModelBuilder.DEFAULT_PSEUDO
MarkovModelBuilder.__init__()
MarkovModelBuilder.get_markov_model()
MarkovModelBuilder.set_initial_probabilities()
MarkovModelBuilder.set_equal_probabilities()
MarkovModelBuilder.set_random_initial_probabilities()
MarkovModelBuilder.set_random_transition_probabilities()
MarkovModelBuilder.set_random_emission_probabilities()
MarkovModelBuilder.set_random_probabilities()
MarkovModelBuilder.allow_all_transitions()
MarkovModelBuilder.allow_transition()
MarkovModelBuilder.destroy_transition()
MarkovModelBuilder.set_transition_score()
MarkovModelBuilder.set_transition_pseudocount()
MarkovModelBuilder.set_emission_score()
MarkovModelBuilder.set_emission_pseudocount()
HiddenMarkovModel
- Bio.HMM.Trainer module
- Bio.HMM.Utilities module
Module contents
A selection of Hidden Markov Model code.