Bio.SearchIO.HmmerIO.hmmer3_tab module
Bio.SearchIO parser for HMMER table output format.
- class Bio.SearchIO.HmmerIO.hmmer3_tab.Hmmer3TabParser(handle)
Bases:
object
Parser for the HMMER table format.
- __init__(handle)
Initialize the class.
- __iter__()
Iterate over Hmmer3TabParser, yields query results.
- class Bio.SearchIO.HmmerIO.hmmer3_tab.Hmmer3TabIndexer(filename, **kwargs)
Bases:
SearchIndexer
Indexer class for HMMER table output.
- __iter__()
Iterate over the file handle; yields key, start offset, and length.
- get_raw(offset)
Return the raw bytes string of a QueryResult object from the given offset.
- __abstractmethods__ = frozenset({})