Bio.PDB.StructureAlignment module
Map residues of two structures to each other based on a FASTA alignment.
- class Bio.PDB.StructureAlignment.StructureAlignment(fasta_align, m1, m2, si=0, sj=1)
Bases:
object
Class to align two structures based on an alignment of their sequences.
- __init__(fasta_align, m1, m2, si=0, sj=1)
Initialize.
- Attributes:
fasta_align - Alignment object
m1, m2 - two models
si, sj - the sequences in the Alignment object that correspond to the structures
- get_maps()
Map residues between the structures.
Return two dictionaries that map a residue in one structure to the equivealent residue in the other structure.
- get_iterator()
Create an iterator over all residue pairs.