Python Module Index

b
 
b
Bio
    Bio.Affy
    Bio.Affy.CelFile
    Bio.Align
    Bio.Align.a2m
    Bio.Align.AlignInfo
    Bio.Align.Applications
    Bio.Align.bed
    Bio.Align.bigbed
    Bio.Align.bigmaf
    Bio.Align.bigpsl
    Bio.Align.clustal
    Bio.Align.emboss
    Bio.Align.exonerate
    Bio.Align.fasta
    Bio.Align.hhr
    Bio.Align.interfaces
    Bio.Align.maf
    Bio.Align.mauve
    Bio.Align.msf
    Bio.Align.nexus
    Bio.Align.phylip
    Bio.Align.psl
    Bio.Align.sam
    Bio.Align.stockholm
    Bio.Align.substitution_matrices
    Bio.Align.tabular
    Bio.AlignIO
    Bio.AlignIO.ClustalIO
    Bio.AlignIO.EmbossIO
    Bio.AlignIO.FastaIO
    Bio.AlignIO.Interfaces
    Bio.AlignIO.MafIO
    Bio.AlignIO.MauveIO
    Bio.AlignIO.MsfIO
    Bio.AlignIO.NexusIO
    Bio.AlignIO.PhylipIO
    Bio.AlignIO.StockholmIO
    Bio.Application
    Bio.bgzf
    Bio.Blast
    Bio.Blast.Applications
    Bio.Blast.NCBIWWW
    Bio.Blast.NCBIXML
    Bio.Blast.ParseBlastTable
    Bio.Blast.Record
    Bio.CAPS
    Bio.Cluster
    Bio.codonalign
    Bio.codonalign.codonalignment
    Bio.codonalign.codonseq
    Bio.Compass
    Bio.Data
    Bio.Data.CodonTable
    Bio.Data.IUPACData
    Bio.Data.PDBData
    Bio.Data.SCOPData
    Bio.Emboss
    Bio.Emboss.Applications
    Bio.Emboss.Primer3
    Bio.Emboss.PrimerSearch
    Bio.Entrez
    Bio.Entrez.Parser
    Bio.ExPASy
    Bio.ExPASy.cellosaurus
    Bio.ExPASy.Enzyme
    Bio.ExPASy.Prodoc
    Bio.ExPASy.Prosite
    Bio.ExPASy.ScanProsite
    Bio.File
    Bio.GenBank
    Bio.GenBank.Record
    Bio.GenBank.Scanner
    Bio.GenBank.utils
    Bio.Geo
    Bio.Geo.Record
    Bio.Graphics
    Bio.Graphics.BasicChromosome
    Bio.Graphics.ColorSpiral
    Bio.Graphics.Comparative
    Bio.Graphics.DisplayRepresentation
    Bio.Graphics.Distribution
    Bio.Graphics.GenomeDiagram
    Bio.Graphics.KGML_vis
    Bio.HMM
    Bio.HMM.DynamicProgramming
    Bio.HMM.MarkovModel
    Bio.HMM.Trainer
    Bio.HMM.Utilities
    Bio.KEGG
    Bio.KEGG.Compound
    Bio.KEGG.Enzyme
    Bio.KEGG.Gene
    Bio.KEGG.KGML
    Bio.KEGG.KGML.KGML_parser
    Bio.KEGG.KGML.KGML_pathway
    Bio.KEGG.Map
    Bio.KEGG.REST
    Bio.kNN
    Bio.LogisticRegression
    Bio.MarkovModel
    Bio.MaxEntropy
    Bio.Medline
    Bio.motifs
    Bio.motifs.alignace
    Bio.motifs.applications
    Bio.motifs.clusterbuster
    Bio.motifs.jaspar
    Bio.motifs.jaspar.db
    Bio.motifs.mast
    Bio.motifs.matrix
    Bio.motifs.meme
    Bio.motifs.minimal
    Bio.motifs.pfm
    Bio.motifs.thresholds
    Bio.motifs.transfac
    Bio.motifs.xms
    Bio.NaiveBayes
    Bio.Nexus
    Bio.Nexus.Nexus
    Bio.Nexus.Nodes
    Bio.Nexus.StandardData
    Bio.Nexus.Trees
    Bio.NMR
    Bio.NMR.NOEtools
    Bio.NMR.xpktools
    Bio.pairwise2
    Bio.Pathway
    Bio.Pathway.Rep
    Bio.Pathway.Rep.Graph
    Bio.Pathway.Rep.MultiGraph
    Bio.PDB
    Bio.PDB.AbstractPropertyMap
    Bio.PDB.Atom
    Bio.PDB.cealign
    Bio.PDB.Chain
    Bio.PDB.Dice
    Bio.PDB.DSSP
    Bio.PDB.Entity
    Bio.PDB.FragmentMapper
    Bio.PDB.HSExposure
    Bio.PDB.ic_data
    Bio.PDB.ic_rebuild
    Bio.PDB.internal_coords
    Bio.PDB.MMCIF2Dict
    Bio.PDB.mmcifio
    Bio.PDB.MMCIFParser
    Bio.PDB.mmtf
    Bio.PDB.mmtf.DefaultParser
    Bio.PDB.mmtf.mmtfio
    Bio.PDB.Model
    Bio.PDB.NACCESS
    Bio.PDB.NeighborSearch
    Bio.PDB.parse_pdb_header
    Bio.PDB.PDBExceptions
    Bio.PDB.PDBIO
    Bio.PDB.PDBList
    Bio.PDB.PDBParser
    Bio.PDB.PICIO
    Bio.PDB.Polypeptide
    Bio.PDB.PSEA
    Bio.PDB.qcprot
    Bio.PDB.QCPSuperimposer
    Bio.PDB.Residue
    Bio.PDB.ResidueDepth
    Bio.PDB.SASA
    Bio.PDB.SCADIO
    Bio.PDB.Selection
    Bio.PDB.Structure
    Bio.PDB.StructureAlignment
    Bio.PDB.StructureBuilder
    Bio.PDB.Superimposer
    Bio.PDB.vectors
    Bio.phenotype
    Bio.phenotype.phen_micro
    Bio.phenotype.pm_fitting
    Bio.Phylo
    Bio.Phylo.Applications
    Bio.Phylo.BaseTree
    Bio.Phylo.CDAO
    Bio.Phylo.CDAOIO
    Bio.Phylo.Consensus
    Bio.Phylo.Newick
    Bio.Phylo.NewickIO
    Bio.Phylo.NeXML
    Bio.Phylo.NeXMLIO
    Bio.Phylo.NexusIO
    Bio.Phylo.PAML
    Bio.Phylo.PAML.baseml
    Bio.Phylo.PAML.chi2
    Bio.Phylo.PAML.codeml
    Bio.Phylo.PAML.yn00
    Bio.Phylo.PhyloXML
    Bio.Phylo.PhyloXMLIO
    Bio.Phylo.TreeConstruction
    Bio.PopGen
    Bio.PopGen.GenePop
    Bio.PopGen.GenePop.Controller
    Bio.PopGen.GenePop.EasyController
    Bio.PopGen.GenePop.FileParser
    Bio.PopGen.GenePop.LargeFileParser
    Bio.Restriction
    Bio.Restriction.PrintFormat
    Bio.Restriction.Restriction_Dictionary
    Bio.SCOP
    Bio.SCOP.Cla
    Bio.SCOP.Des
    Bio.SCOP.Dom
    Bio.SCOP.Hie
    Bio.SCOP.Raf
    Bio.SCOP.Residues
    Bio.SearchIO
    Bio.SearchIO.BlastIO
    Bio.SearchIO.BlastIO.blast_tab
    Bio.SearchIO.BlastIO.blast_text
    Bio.SearchIO.BlastIO.blast_xml
    Bio.SearchIO.BlatIO
    Bio.SearchIO.ExonerateIO
    Bio.SearchIO.ExonerateIO.exonerate_cigar
    Bio.SearchIO.ExonerateIO.exonerate_text
    Bio.SearchIO.ExonerateIO.exonerate_vulgar
    Bio.SearchIO.FastaIO
    Bio.SearchIO.HHsuiteIO
    Bio.SearchIO.HHsuiteIO.hhsuite2_text
    Bio.SearchIO.HmmerIO
    Bio.SearchIO.HmmerIO.hmmer2_text
    Bio.SearchIO.HmmerIO.hmmer3_domtab
    Bio.SearchIO.HmmerIO.hmmer3_tab
    Bio.SearchIO.HmmerIO.hmmer3_text
    Bio.SearchIO.InterproscanIO
    Bio.SearchIO.InterproscanIO.interproscan_xml
    Bio.Seq
    Bio.SeqFeature
    Bio.SeqIO
    Bio.SeqIO.AbiIO
    Bio.SeqIO.AceIO
    Bio.SeqIO.FastaIO
    Bio.SeqIO.GckIO
    Bio.SeqIO.IgIO
    Bio.SeqIO.InsdcIO
    Bio.SeqIO.Interfaces
    Bio.SeqIO.NibIO
    Bio.SeqIO.PdbIO
    Bio.SeqIO.PhdIO
    Bio.SeqIO.PirIO
    Bio.SeqIO.QualityIO
    Bio.SeqIO.SeqXmlIO
    Bio.SeqIO.SffIO
    Bio.SeqIO.SnapGeneIO
    Bio.SeqIO.SwissIO
    Bio.SeqIO.TabIO
    Bio.SeqIO.TwoBitIO
    Bio.SeqIO.UniprotIO
    Bio.SeqIO.XdnaIO
    Bio.SeqRecord
    Bio.Sequencing
    Bio.Sequencing.Ace
    Bio.Sequencing.Applications
    Bio.Sequencing.Phd
    Bio.SeqUtils
    Bio.SeqUtils.CheckSum
    Bio.SeqUtils.CodonUsage
    Bio.SeqUtils.CodonUsageIndices
    Bio.SeqUtils.IsoelectricPoint
    Bio.SeqUtils.lcc
    Bio.SeqUtils.MeltingTemp
    Bio.SeqUtils.ProtParam
    Bio.SeqUtils.ProtParamData
    Bio.SVDSuperimposer
    Bio.SwissProt
    Bio.SwissProt.KeyWList
    Bio.TogoWS
    Bio.UniGene
    Bio.UniProt
    Bio.UniProt.GOA
    Bio.Wise
    Bio.Wise.dnal
    Bio.Wise.psw
BioSQL
    BioSQL.BioSeq
    BioSQL.BioSeqDatabase
    BioSQL.DBUtils
    BioSQL.Loader