Python Module Index

b


	b
	`Bio`
	`Bio.Affy`
	`Bio.Affy.CelFile`
	`Bio.Align`
	`Bio.Align.a2m`
	`Bio.Align.AlignInfo`
	`Bio.Align.Applications`
	`Bio.Align.bed`
	`Bio.Align.bigbed`
	`Bio.Align.bigmaf`
	`Bio.Align.bigpsl`
	`Bio.Align.clustal`
	`Bio.Align.emboss`
	`Bio.Align.exonerate`
	`Bio.Align.fasta`
	`Bio.Align.hhr`
	`Bio.Align.interfaces`
	`Bio.Align.maf`
	`Bio.Align.mauve`
	`Bio.Align.msf`
	`Bio.Align.nexus`
	`Bio.Align.phylip`
	`Bio.Align.psl`
	`Bio.Align.sam`
	`Bio.Align.stockholm`
	`Bio.Align.substitution_matrices`
	`Bio.Align.tabular`
	`Bio.AlignIO`
	`Bio.AlignIO.ClustalIO`
	`Bio.AlignIO.EmbossIO`
	`Bio.AlignIO.FastaIO`
	`Bio.AlignIO.Interfaces`
	`Bio.AlignIO.MafIO`
	`Bio.AlignIO.MauveIO`
	`Bio.AlignIO.MsfIO`
	`Bio.AlignIO.NexusIO`
	`Bio.AlignIO.PhylipIO`
	`Bio.AlignIO.StockholmIO`
	`Bio.Application`
	`Bio.bgzf`
	`Bio.Blast`
	`Bio.Blast.Applications`
	`Bio.Blast.NCBIWWW`
	`Bio.Blast.NCBIXML`
	`Bio.Blast.ParseBlastTable`
	`Bio.Blast.Record`
	`Bio.CAPS`
	`Bio.Cluster`
	`Bio.codonalign`
	`Bio.codonalign.codonalignment`
	`Bio.codonalign.codonseq`
	`Bio.Compass`
	`Bio.Data`
	`Bio.Data.CodonTable`
	`Bio.Data.IUPACData`
	`Bio.Data.PDBData`
	`Bio.Data.SCOPData`
	`Bio.Emboss`
	`Bio.Emboss.Applications`
	`Bio.Emboss.Primer3`
	`Bio.Emboss.PrimerSearch`
	`Bio.Entrez`
	`Bio.Entrez.Parser`
	`Bio.ExPASy`
	`Bio.ExPASy.cellosaurus`
	`Bio.ExPASy.Enzyme`
	`Bio.ExPASy.Prodoc`
	`Bio.ExPASy.Prosite`
	`Bio.ExPASy.ScanProsite`
	`Bio.File`
	`Bio.GenBank`
	`Bio.GenBank.Record`
	`Bio.GenBank.Scanner`
	`Bio.GenBank.utils`
	`Bio.Geo`
	`Bio.Geo.Record`
	`Bio.Graphics`
	`Bio.Graphics.BasicChromosome`
	`Bio.Graphics.ColorSpiral`
	`Bio.Graphics.Comparative`
	`Bio.Graphics.DisplayRepresentation`
	`Bio.Graphics.Distribution`
	`Bio.Graphics.GenomeDiagram`
	`Bio.Graphics.KGML_vis`
	`Bio.HMM`
	`Bio.HMM.DynamicProgramming`
	`Bio.HMM.MarkovModel`
	`Bio.HMM.Trainer`
	`Bio.HMM.Utilities`
	`Bio.KEGG`
	`Bio.KEGG.Compound`
	`Bio.KEGG.Enzyme`
	`Bio.KEGG.Gene`
	`Bio.KEGG.KGML`
	`Bio.KEGG.KGML.KGML_parser`
	`Bio.KEGG.KGML.KGML_pathway`
	`Bio.KEGG.Map`
	`Bio.KEGG.REST`
	`Bio.kNN`
	`Bio.LogisticRegression`
	`Bio.MarkovModel`
	`Bio.MaxEntropy`
	`Bio.Medline`
	`Bio.motifs`
	`Bio.motifs.alignace`
	`Bio.motifs.applications`
	`Bio.motifs.clusterbuster`
	`Bio.motifs.jaspar`
	`Bio.motifs.jaspar.db`
	`Bio.motifs.mast`
	`Bio.motifs.matrix`
	`Bio.motifs.meme`
	`Bio.motifs.minimal`
	`Bio.motifs.pfm`
	`Bio.motifs.thresholds`
	`Bio.motifs.transfac`
	`Bio.motifs.xms`
	`Bio.NaiveBayes`
	`Bio.Nexus`
	`Bio.Nexus.Nexus`
	`Bio.Nexus.Nodes`
	`Bio.Nexus.StandardData`
	`Bio.Nexus.Trees`
	`Bio.NMR`
	`Bio.NMR.NOEtools`
	`Bio.NMR.xpktools`
	`Bio.pairwise2`
	`Bio.Pathway`
	`Bio.Pathway.Rep`
	`Bio.Pathway.Rep.Graph`
	`Bio.Pathway.Rep.MultiGraph`
	`Bio.PDB`
	`Bio.PDB.AbstractPropertyMap`
	`Bio.PDB.Atom`
	`Bio.PDB.cealign`
	`Bio.PDB.Chain`
	`Bio.PDB.Dice`
	`Bio.PDB.DSSP`
	`Bio.PDB.Entity`
	`Bio.PDB.FragmentMapper`
	`Bio.PDB.HSExposure`
	`Bio.PDB.ic_data`
	`Bio.PDB.ic_rebuild`
	`Bio.PDB.internal_coords`
	`Bio.PDB.MMCIF2Dict`
	`Bio.PDB.mmcifio`
	`Bio.PDB.MMCIFParser`
	`Bio.PDB.mmtf`
	`Bio.PDB.mmtf.DefaultParser`
	`Bio.PDB.mmtf.mmtfio`
	`Bio.PDB.Model`
	`Bio.PDB.NACCESS`
	`Bio.PDB.NeighborSearch`
	`Bio.PDB.parse_pdb_header`
	`Bio.PDB.PDBExceptions`
	`Bio.PDB.PDBIO`
	`Bio.PDB.PDBList`
	`Bio.PDB.PDBParser`
	`Bio.PDB.PICIO`
	`Bio.PDB.Polypeptide`
	`Bio.PDB.PSEA`
	`Bio.PDB.qcprot`
	`Bio.PDB.QCPSuperimposer`
	`Bio.PDB.Residue`
	`Bio.PDB.ResidueDepth`
	`Bio.PDB.SASA`
	`Bio.PDB.SCADIO`
	`Bio.PDB.Selection`
	`Bio.PDB.Structure`
	`Bio.PDB.StructureAlignment`
	`Bio.PDB.StructureBuilder`
	`Bio.PDB.Superimposer`
	`Bio.PDB.vectors`
	`Bio.phenotype`
	`Bio.phenotype.phen_micro`
	`Bio.phenotype.pm_fitting`
	`Bio.Phylo`
	`Bio.Phylo.Applications`
	`Bio.Phylo.BaseTree`
	`Bio.Phylo.CDAO`
	`Bio.Phylo.CDAOIO`
	`Bio.Phylo.Consensus`
	`Bio.Phylo.Newick`
	`Bio.Phylo.NewickIO`
	`Bio.Phylo.NeXML`
	`Bio.Phylo.NeXMLIO`
	`Bio.Phylo.NexusIO`
	`Bio.Phylo.PAML`
	`Bio.Phylo.PAML.baseml`
	`Bio.Phylo.PAML.chi2`
	`Bio.Phylo.PAML.codeml`
	`Bio.Phylo.PAML.yn00`
	`Bio.Phylo.PhyloXML`
	`Bio.Phylo.PhyloXMLIO`
	`Bio.Phylo.TreeConstruction`
	`Bio.PopGen`
	`Bio.PopGen.GenePop`
	`Bio.PopGen.GenePop.Controller`
	`Bio.PopGen.GenePop.EasyController`
	`Bio.PopGen.GenePop.FileParser`
	`Bio.PopGen.GenePop.LargeFileParser`
	`Bio.Restriction`
	`Bio.Restriction.PrintFormat`
	`Bio.Restriction.Restriction_Dictionary`
	`Bio.SCOP`
	`Bio.SCOP.Cla`
	`Bio.SCOP.Des`
	`Bio.SCOP.Dom`
	`Bio.SCOP.Hie`
	`Bio.SCOP.Raf`
	`Bio.SCOP.Residues`
	`Bio.SearchIO`
	`Bio.SearchIO.BlastIO`
	`Bio.SearchIO.BlastIO.blast_tab`
	`Bio.SearchIO.BlastIO.blast_text`
	`Bio.SearchIO.BlastIO.blast_xml`
	`Bio.SearchIO.BlatIO`
	`Bio.SearchIO.ExonerateIO`
	`Bio.SearchIO.ExonerateIO.exonerate_cigar`
	`Bio.SearchIO.ExonerateIO.exonerate_text`
	`Bio.SearchIO.ExonerateIO.exonerate_vulgar`
	`Bio.SearchIO.FastaIO`
	`Bio.SearchIO.HHsuiteIO`
	`Bio.SearchIO.HHsuiteIO.hhsuite2_text`
	`Bio.SearchIO.HmmerIO`
	`Bio.SearchIO.HmmerIO.hmmer2_text`
	`Bio.SearchIO.HmmerIO.hmmer3_domtab`
	`Bio.SearchIO.HmmerIO.hmmer3_tab`
	`Bio.SearchIO.HmmerIO.hmmer3_text`
	`Bio.SearchIO.InterproscanIO`
	`Bio.SearchIO.InterproscanIO.interproscan_xml`
	`Bio.Seq`
	`Bio.SeqFeature`
	`Bio.SeqIO`
	`Bio.SeqIO.AbiIO`
	`Bio.SeqIO.AceIO`
	`Bio.SeqIO.FastaIO`
	`Bio.SeqIO.GckIO`
	`Bio.SeqIO.IgIO`
	`Bio.SeqIO.InsdcIO`
	`Bio.SeqIO.Interfaces`
	`Bio.SeqIO.NibIO`
	`Bio.SeqIO.PdbIO`
	`Bio.SeqIO.PhdIO`
	`Bio.SeqIO.PirIO`
	`Bio.SeqIO.QualityIO`
	`Bio.SeqIO.SeqXmlIO`
	`Bio.SeqIO.SffIO`
	`Bio.SeqIO.SnapGeneIO`
	`Bio.SeqIO.SwissIO`
	`Bio.SeqIO.TabIO`
	`Bio.SeqIO.TwoBitIO`
	`Bio.SeqIO.UniprotIO`
	`Bio.SeqIO.XdnaIO`
	`Bio.SeqRecord`
	`Bio.Sequencing`
	`Bio.Sequencing.Ace`
	`Bio.Sequencing.Applications`
	`Bio.Sequencing.Phd`
	`Bio.SeqUtils`
	`Bio.SeqUtils.CheckSum`
	`Bio.SeqUtils.CodonUsage`
	`Bio.SeqUtils.CodonUsageIndices`
	`Bio.SeqUtils.IsoelectricPoint`
	`Bio.SeqUtils.lcc`
	`Bio.SeqUtils.MeltingTemp`
	`Bio.SeqUtils.ProtParam`
	`Bio.SeqUtils.ProtParamData`
	`Bio.SVDSuperimposer`
	`Bio.SwissProt`
	`Bio.SwissProt.KeyWList`
	`Bio.TogoWS`
	`Bio.UniGene`
	`Bio.UniProt`
	`Bio.UniProt.GOA`
	`Bio.Wise`
	`Bio.Wise.dnal`
	`Bio.Wise.psw`
	`BioSQL`
	`BioSQL.BioSeq`
	`BioSQL.BioSeqDatabase`
	`BioSQL.DBUtils`
	`BioSQL.Loader`