Bio.SearchIO.BlastIO.blast_text module

Bio.SearchIO parser for BLAST+ plain text output formats.

At the moment this is a wrapper around Biopython’s NCBIStandalone text parser (which is now deprecated).

class Bio.SearchIO.BlastIO.blast_text.BlastTextParser(handle)

Bases: object

Parser for the BLAST text format.

__init__(handle)

Initialize the class.

__iter__()

Iterate over BlastTextParser, yields query results.