Bio.PDB package

Subpackages

• Bio.PDB.QCPSuperimposer package
  • Module contents
• Bio.PDB.mmtf package
  • Submodules
    • Bio.PDB.mmtf.DefaultParser module
    • Bio.PDB.mmtf.mmtfio module
  • Module contents

Submodules

• Bio.PDB.AbstractPropertyMap module
• Bio.PDB.Atom module
• Bio.PDB.Chain module
• Bio.PDB.DSSP module
  • Usage
  • Examples
• Bio.PDB.Dice module
• Bio.PDB.Entity module
• Bio.PDB.FragmentMapper module
• Bio.PDB.HSExposure module
• Bio.PDB.MMCIF2Dict module
• Bio.PDB.MMCIFParser module
• Bio.PDB.Model module
• Bio.PDB.NACCESS module
• Bio.PDB.NeighborSearch module
• Bio.PDB.PDBExceptions module
• Bio.PDB.PDBIO module
• Bio.PDB.PDBList module
• Bio.PDB.PDBParser module
• Bio.PDB.PICIO module
• Bio.PDB.PSEA module
• Bio.PDB.Polypeptide module
• Bio.PDB.Residue module
• Bio.PDB.ResidueDepth module
• Bio.PDB.SASA module
• Bio.PDB.SCADIO module
• Bio.PDB.Selection module
• Bio.PDB.Structure module
• Bio.PDB.StructureAlignment module
• Bio.PDB.StructureBuilder module
• Bio.PDB.Superimposer module
• Bio.PDB.cealign module
  • Reference
• Bio.PDB.ic_data module
• Bio.PDB.ic_rebuild module
• Bio.PDB.internal_coords module
• Bio.PDB.mmcifio module
• Bio.PDB.parse_pdb_header module
• Bio.PDB.qcprot module
• Bio.PDB.vectors module

Module contents

Classes that deal with macromolecular crystal structures.

Includes: PDB and mmCIF parsers, a Structure class, a module to keep a local copy of the PDB up-to-date, selective IO of PDB files, etc.

Original Author: Thomas Hamelryck. Contributions by: - Peter Cock - Joe Greener - Rob Miller - Lenna X. Peterson - Joao Rodrigues - Kristian Rother - Eric Talevich - and many others.