Bio.Align.emboss module

Bio.Align support for “emboss” alignment output from EMBOSS tools.

This module contains a parser for the EMBOSS srspair/pair/simple file format, for example from the needle, water, and stretcher tools.

class Bio.Align.emboss.AlignmentIterator(source)

Bases: Bio.Align.interfaces.AlignmentIterator

Emboss alignment iterator.

For reading the (pairwise) alignments from EMBOSS tools in what they call the “pairs” and “simple” formats.

__init__(source)

Create an Iterator object.

Arguments:

• source - input data or file name

__abstractmethods__ = frozenset({})