Bio.motifs.pfm module
Parse various position frequency matrix format files.
- class Bio.motifs.pfm.Record(iterable=(), /)
Bases:
list
Class to store the information in a position frequency matrix table.
The record inherits from a list containing the individual motifs.
- __str__()
Return a string representation of the motifs in the Record object.
- Bio.motifs.pfm.read(handle, pfm_format)
Read motif(s) from a file in various position frequency matrix formats.
Return the record of PFM(s). Call the appropriate routine based on the format passed.
- Bio.motifs.pfm.write(motifs)
Return the representation of motifs in Cluster Buster position frequency matrix format.