Bio.motifs.clusterbuster module
Parse Cluster Buster position frequency matrix files.
- class Bio.motifs.clusterbuster.Record(iterable=(), /)
Bases:
list
Class to store the information in a Cluster Buster matrix table.
The record inherits from a list containing the individual motifs.
- __str__()
Return a string representation of the motifs in the Record object.
- Bio.motifs.clusterbuster.read(handle)
Read motifs in Cluster Buster position frequency matrix format from a file handle.
Cluster Buster motif format: https://bu.wenglab.org/cluster-buster/help/cis-format.html
- Bio.motifs.clusterbuster.write(motifs, precision=0)
Return the representation of motifs in Cluster Buster position frequency matrix format.
By default (precision=0) Cluster Buster position frequency matrices will be written with integer values. If a higher precision value is set, Cluster Buster position frequency matrices will be written as floats with x decimal places.