Bio.SeqIO.GfaIO module

Bio.SeqIO support for the Graphical Fragment Assembly format.

This format is output by many assemblers and includes linkage information for how the different sequences fit together, however, we just care about the segment (sequence) information.

Documentation: - Version 1.x: https://gfa-spec.github.io/GFA-spec/GFA1.html - Version 2.0: https://gfa-spec.github.io/GFA-spec/GFA2.html

Bio.SeqIO.GfaIO.Gfa1Iterator(source)

Parser for GFA 1.x files.

Documentation: https://gfa-spec.github.io/GFA-spec/GFA1.html

Bio.SeqIO.GfaIO.Gfa2Iterator(source)

Parser for GFA 2.0 files.

Documentation for version 2: https://gfa-spec.github.io/GFA-spec/GFA2.html