Bio.SearchIO.ExonerateIO.exonerate_text module
Bio.SearchIO parser for Exonerate plain text output format.
- class Bio.SearchIO.ExonerateIO.exonerate_text.ExonerateTextParser(handle)
Bases:
_BaseExonerateParser
Parser for Exonerate plain text output.
- parse_alignment_block(header)
Parse alignment block, return query result, hits, hsps.
- __abstractmethods__ = frozenset({})
- class Bio.SearchIO.ExonerateIO.exonerate_text.ExonerateTextIndexer(filename, **kwargs)
Bases:
_BaseExonerateIndexer
Indexer class for Exonerate plain text.
- get_qresult_id(pos)
Return the query ID from the nearest “Query:” line.
- get_raw(offset)
Return the raw string of a QueryResult object from the given offset.
- __abstractmethods__ = frozenset({})