Bio.SCOP.Dom module
Handle the SCOP DOMain file.
The DOM file has been officially deprecated. For more information see the SCOP”release notes.”:http://scop.berkeley.edu/release-notes-1.55.html The DOM files for older releases can be found “elsewhere at SCOP.”:http://scop.mrc-lmb.cam.ac.uk/scop/parse/
- class Bio.SCOP.Dom.Record(line=None)
Bases:
object
Holds information for one SCOP domain.
- Attributes:
sid - The SCOP ID of the entry, e.g. d1anu1
residues - The domain definition as a Residues object
hierarchy - A string specifying where this domain is in the hierarchy.
- __init__(line=None)
Initialize the class.
- __str__()
Represent the SCOP domain record as a tab-separated string.
- Bio.SCOP.Dom.parse(handle)
Iterate over a DOM file as a Dom record for each line.
- Arguments:
handle – file-like object.