Bio.Phylo.PAML package

Submodules

• Bio.Phylo.PAML.baseml module
  • BasemlError
  • Baseml
    • Baseml.__init__()
    • Baseml.write_ctl_file()
    • Baseml.read_ctl_file()
    • Baseml.run()
  • read()
• Bio.Phylo.PAML.chi2 module
  • cdf_chi2()
• Bio.Phylo.PAML.codeml module
  • CodemlError
  • Codeml
    • Codeml.__init__()
    • Codeml.write_ctl_file()
    • Codeml.read_ctl_file()
    • Codeml.print_options()
    • Codeml.run()
  • read()
• Bio.Phylo.PAML.yn00 module
  • Yn00Error
  • Yn00
    • Yn00.__init__()
    • Yn00.write_ctl_file()
    • Yn00.read_ctl_file()
    • Yn00.run()
  • read()

Module contents

Support for PAML.