Bio.AlignIO.ClustalIO module
Bio.AlignIO support for “clustal” output from CLUSTAL W and other tools.
You are expected to use this module via the Bio.AlignIO functions (or the Bio.SeqIO functions if you want to work directly with the gapped sequences).
- class Bio.AlignIO.ClustalIO.ClustalWriter(handle)
Bases:
SequentialAlignmentWriter
Clustalw alignment writer.
- write_alignment(alignment)
Use this to write (another) single alignment to an open file.
- class Bio.AlignIO.ClustalIO.ClustalIterator(handle, seq_count=None)
Bases:
AlignmentIterator
Clustalw alignment iterator.
- __next__()
Parse the next alignment from the handle.