Bio.Align.emboss module
Bio.Align support for “emboss” alignment output from EMBOSS tools.
This module contains a parser for the EMBOSS srspair/pair/simple file format, for example from the needle, water, and stretcher tools.
- class Bio.Align.emboss.AlignmentIterator(source)
Bases:
AlignmentIterator
Emboss alignment iterator.
For reading the (pairwise) alignments from EMBOSS tools in what they call the “pairs” and “simple” formats.
- fmt: str | None = 'EMBOSS'
- __abstractmethods__ = frozenset({})