Biopython Documentation

This is from Biopython 1.84.

Table of contents

• Biopython Tutorial & Cookbook
  • Introduction
  • Quick Start – What can you do with Biopython?
  • Sequence objects
  • Sequence annotation objects
  • Sequence Input/Output
  • Sequence alignments
  • Pairwise sequence alignment
  • Multiple Sequence Alignment objects
  • Pairwise alignments using pairwise2
  • BLAST (new)
  • BLAST (old)
  • BLAST and other sequence search tools
  • Accessing NCBI’s Entrez databases
  • Swiss-Prot and ExPASy
  • Going 3D: The PDB module
  • Bio.PopGen: Population genetics
  • Phylogenetics with Bio.Phylo
  • Sequence motif analysis using Bio.motifs
  • Cluster analysis
  • Graphics including GenomeDiagram
  • KEGG
  • Bio.phenotype: analyze phenotypic data
  • Cookbook – Cool things to do with it
  • The Biopython testing framework
  • Where to go from here – contributing to Biopython
  • Appendix: Useful stuff about Python
  • Bibliography
• API documentation
  • Bio package
  • BioSQL package