Bio.SearchIO.ExonerateIO.exonerate_text module¶
Bio.SearchIO parser for Exonerate plain text output format.
- class Bio.SearchIO.ExonerateIO.exonerate_text.ExonerateTextParser(handle)¶
Bases:
Bio.SearchIO.ExonerateIO._base._BaseExonerateParserParser for Exonerate plain text output.
- parse_alignment_block(self, header)¶
Parse alignment block, return query result, hits, hsps.
- __abstractmethods__ = frozenset({})¶
- class Bio.SearchIO.ExonerateIO.exonerate_text.ExonerateTextIndexer(filename, **kwargs)¶
Bases:
Bio.SearchIO.ExonerateIO._base._BaseExonerateIndexerIndexer class for Exonerate plain text.
- get_qresult_id(self, pos)¶
Return the query ID from the nearest “Query:” line.
- get_raw(self, offset)¶
Return the raw string of a QueryResult object from the given offset.
- __abstractmethods__ = frozenset({})¶