Bio.SearchIO.ExonerateIO.exonerate_cigar module¶
Bio.SearchIO parser for Exonerate cigar output format.
- class Bio.SearchIO.ExonerateIO.exonerate_cigar.ExonerateCigarParser(handle)¶
Bases:
Bio.SearchIO.ExonerateIO._base._BaseExonerateParserParser for Exonerate cigar strings.
- parse_alignment_block(self, header)¶
Parse alignment block for cigar format, return query results, hits, hsps.
- __abstractmethods__ = frozenset({})¶
- class Bio.SearchIO.ExonerateIO.exonerate_cigar.ExonerateCigarIndexer(filename, **kwargs)¶
Bases:
Bio.SearchIO.ExonerateIO.exonerate_vulgar.ExonerateVulgarIndexerIndexer class for exonerate cigar lines.
- get_qresult_id(self, pos)¶
Return the query ID of the nearest cigar line.
- __abstractmethods__ = frozenset({})¶