Bio.SearchIO.ExonerateIO.exonerate_vulgar module¶
Bio.SearchIO parser for Exonerate vulgar output format.
- class Bio.SearchIO.ExonerateIO.exonerate_vulgar.ExonerateVulgarParser(handle)¶
Bases:
Bio.SearchIO.ExonerateIO._base._BaseExonerateParserParser for Exonerate vulgar strings.
- parse_alignment_block(self, header)¶
Parse alignment block for vulgar format, return query results, hits, hsps.
- __abstractmethods__ = frozenset({})¶
- class Bio.SearchIO.ExonerateIO.exonerate_vulgar.ExonerateVulgarIndexer(filename, **kwargs)¶
Bases:
Bio.SearchIO.ExonerateIO._base._BaseExonerateIndexerIndexer class for exonerate vulgar lines.
- get_qresult_id(self, pos)¶
Return the query ID of the nearest vulgar line.
- get_raw(self, offset)¶
Return the raw bytes string of a QueryResult object from the given offset.
- __abstractmethods__ = frozenset({})¶