Bio.SearchIO.ExonerateIO.exonerate_cigar module¶
Bio.SearchIO parser for Exonerate cigar output format.
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class
Bio.SearchIO.ExonerateIO.exonerate_cigar.ExonerateCigarParser(handle)¶ Bases:
Bio.SearchIO.ExonerateIO._base._BaseExonerateParserParser for Exonerate cigar strings.
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parse_alignment_block(self, header)¶ Parse alignment block for cigar format, return query results, hits, hsps.
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__abstractmethods__= frozenset({})¶
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class
Bio.SearchIO.ExonerateIO.exonerate_cigar.ExonerateCigarIndexer(filename, **kwargs)¶ Bases:
Bio.SearchIO.ExonerateIO.exonerate_vulgar.ExonerateVulgarIndexerIndexer class for exonerate cigar lines.
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get_qresult_id(self, pos)¶ Return the query ID of the nearest cigar line.
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__abstractmethods__= frozenset({})¶
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