Bio.SearchIO.ExonerateIO.exonerate_vulgar module¶
Bio.SearchIO parser for Exonerate vulgar output format.
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class
Bio.SearchIO.ExonerateIO.exonerate_vulgar.
ExonerateVulgarParser
(handle)¶ Bases:
Bio.SearchIO.ExonerateIO._base._BaseExonerateParser
Parser for Exonerate vulgar strings.
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parse_alignment_block
(self, header)¶ Parse alignment block for vulgar format, return query results, hits, hsps.
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__abstractmethods__
= frozenset({})¶
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class
Bio.SearchIO.ExonerateIO.exonerate_vulgar.
ExonerateVulgarIndexer
(filename, **kwargs)¶ Bases:
Bio.SearchIO.ExonerateIO._base._BaseExonerateIndexer
Indexer class for exonerate vulgar lines.
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get_qresult_id
(self, pos)¶ Return the query ID of the nearest vulgar line.
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get_raw
(self, offset)¶ Return the raw bytes string of a QueryResult object from the given offset.
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__abstractmethods__
= frozenset({})¶
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