Biopython Contributors
Note: People are listed here alphabetically by surname. This is only a
partial listing, see also the
contributor listing
in the Biopython source code or the
Contributor page on GitHub.
| |
|
| E-mail |
tiagoantao@gmail.com |
| Affiliation |
Division of Biological Sciences, University of Montana |
| Location |
Missoula, Montana, US |
| Uses Python for |
Almost all programming stuff |
| Work/Research Interests |
Population genetics, Statistics, Machine learning, big data, data science |
| Biopython Contributions |
Bio.PopGen, testing, Python 3 zealot |
| Relevant URL |
http://tiago.org |
Wibowo Arindrarto
| |
|
| E-mail |
bow@bow.web.id |
| Affiliation |
Leiden University Medical Center |
| Location |
Leiden, The Netherlands |
| Uses Python for |
exploring NGS data and other programming-related things |
| Work/Research Interests |
RNA-seq, variant calling, analyzing NGS data in computing clusters |
| Biopython Contributions |
Bio.SearchIO + fixes here and there |
| Relevant URL |
http://bow.web.id |
Sebastian Bassi
| |
|
| E-mail |
sebastian@toyoko.io |
| Affiliation |
Toyoko LLC |
| Location |
Berkeley, CA, US |
| Uses Python for |
Bioinformatics and data manipulation |
| Work/Research Interests |
Bioinformatics software developer |
| Biopython Contributions |
LCC and primer Tm calculation function |
| Relevant URL |
https://www.dnalinux.com |
Jeffrey Chang
| |
|
| E-mail |
jchang@smi.stanford.edu |
| Affiliation |
Postdoctoral Fellow, Duke University |
| Location |
Durham, NC |
| Uses Python for |
Eating spam |
| Work/Research Interests |
Bioinformatics |
| Biopython Contributions |
Co-Founder |
| Relevant URL |
http://www.jeffchang.com/ (possibly not active) |
Brad Chapman
| |
|
| E-mail |
See my web page |
| Affiliation |
The James Hutton Institute (formerly SCRI); previously MOAC Doctoral Training Centre, University of Warwick |
| Location |
Dundee, Scotland, UK |
| Uses Python for |
Bioinformatics, controlling R with rpy, … |
| Work/Research Interests |
Bacterial signalling, genomics, sequencings |
| Biopython Contributions |
Sequence parsing including Bio.SeqIO, Bio.AlignIO, maintaining the BioSQL interface, and documentation |
| Relevant URL |
http://www.hutton.ac.uk/staff/peter-cock and http://www.warwick.ac.uk/go/peter_cock/python/ |
| GitHub |
http://github.com/peterjc |
Andrew Dalke
| |
|
| E-mail |
dalke@dalkescientific.com |
| Affiliation |
Dalke Scientific Software, LLC |
| Location |
Santa Fe, NM |
| Uses Python for |
Just about anything |
| Work/Research Interests |
Large-scale usable systems for scientists |
| Biopython Contributions |
Co-Founder, Seq, Martel, indexing, EUtils, patterns, parsing, … |
| Relevant URL |
http://www.dalkescientific.com/ |
Michiel de Hoon
| |
|
| E-mail |
See my web page |
| Affiliation |
RIKEN Center for Integrative Medical Sciences |
| Location |
Yokohama, Japan |
| Uses Python for |
High-throughput data analysis & Scientific visualization |
| Work/Research Interests |
RNA Genomics & RNA Structures |
| Biopython Contributions |
Bio.Cluster; Bio.Entrez; pairwise aligner in Bio.Align |
| Relevant URL |
http://acgt.riken.jp |
Iddo Friedberg
| |
|
| E-mail |
idoerg “at” gmail.com |
| Affiliation |
Miami University |
| Location |
Oxford, OH, USA |
| Uses Python for |
Maintaining clandestine world domination |
| Work/Research Interests |
Structural Bioinformatics, metagenomics, genomics |
| Biopython Contributions |
SubsMat, FSSP, bits of Align, bits of the Manual, and a lot of silly questions to the lists |
| Relevant URL |
http://iddo-friedberg.org |
Christian Gunning
| |
|
| E-mail |
net at x14n dot org |
| Affiliation |
human, mountain |
| Location |
Missoula, MT |
| Uses Python for |
strings, as glue; also on laundry and dirty dishes |
| Work/Research Interests |
arabidopsis; Biological Sequence Analysis, Durbin et al.; Primer3; www.swig.org; R programming language and rpy.sourceforge.net |
| Relevant URL |
http://www.x14n.org/ |
| |
|
| E-mail |
thamelry at bio.ku.dk |
| Affiliation |
University of Copenhagen |
| Location |
Copenhagen, Denmark |
| Uses Python for |
Annoying FORTRAN programmers |
| Work/Research Interests |
Structural bioinformatics |
| Biopython Contributions |
Bio.PDB, KDTree, SVDSuperimposer |
| Relevant URL |
http://www.binf.ku.dk/research/structural_bioinformatics/ |
Michael Hoffman
| |
|
| E-mail |
michael.hoffman at utoronto.ca |
| Affiliation |
Princess Margaret Cancer Centre/University of Toronto |
| Location |
Toronto |
| Uses Python for |
writing software like Segway |
| Work/Research Interests |
epigenomics, machine learning |
| Biopython Contributions |
Bio.GFF, Bio.DocSQL |
| Relevant URL |
https://hoffmanlab.org/ |
Frank Kauff
| |
|
| E-mail |
frank.kauff at innere.med.uni-giessen.de |
| Affiliation |
University of Giessen |
| Location |
Giessen, Germany |
| Uses Python for |
Phylogenetics and everything else |
| Work/Research Interests |
Phylogenetics and all that’s related, Fungi, Lichens, Cyanobacteria |
| Biopython Contributions |
Phd, Ace, Nexus (mostly with C. Cox) |
| Relevant URL |
http://www.stil-info.de/index.php?id=156 |
Leighton Pritchard
| |
|
| E-mail |
leighton.pritchard@hutton.ac.uk |
| Affiliation |
The James Hutton Institute (formerly the Scottish Crop Research Institute) |
| Location |
Invergowrie, Scotland |
| Uses Python for |
Generally when I have to explain to a computer exactly what I want it to do |
| Work/Research Interests |
Comparative genomics; Systems Biology; Protein sequence-structure-function relationships; Plant host-pathogen interactions and genomics (heavy on the pathogens). |
| Biopython Contributions |
GenomeDiagram, bits and bobs |
| Relevant URL |
http://www.hutton.ac.uk/staff/leighton-pritchard |
João Rodrigues
| |
|
| E-mail |
anaryin@gmail.com |
| Affiliation |
Stanford School of Medicine |
| Location |
Stanford, CA |
| Uses Python for |
Pretty much all my (programming) tasks |
| Work/Research Interests |
Structural Biology, Biophysics, Molecular Simulations, Protein Docking, Homology Modelling, etc.. |
| Biopython Contributions |
Bio.PDB (here and there) |
| Relevant URL |
http://nmr.chem.uu.nl/~joao |
Eric Talevich
| |
|
| Affiliation |
Department of Dermatology, University of California, San Francisco |
| Location |
San Francisco, California, USA |
| Uses Python for |
Scripting, prototyping, math, glue, web dev – it’s my default choice |
| Work/Research Interests |
Cell signaling networks; cancer; pathogens |
| Biopython Contributions |
Bio.Phylo, occasional maintenance of Bio.PDB |
| Relevant URL |
http://etalog.blogspot.com |
Bartek Wilczyński
| |
|
| E-mail |
bartek_AT_rezolwenta.eu.org |
| Affiliation |
Institute of Mathematics, Polish Academy of Science |
| Location |
Warsaw, Poland |
| Uses Python for |
most of his computations |
| Work/Research Interests |
mathematical models of gene regulation |
| Biopython Contributions |
Bio.AlignAce |
| Relevant URL |
http://bartek.rezolwenta.eu.org |
Harry Zuzan
| |
|
| E-mail |
iliketobicycle@gmail.com |
| Affiliation |
Affymetrix |
| Location |
Santa Clara, CA |
| Uses Python for |
you name it |
| Work/Research Interests |
Statistics applied to molecular biology and genetics |
| Biopython Contributions |
Affy package for Affymetrix data |
