Bio.SCOP.Residues module¶
A collection of residues from a PDB structure.
-
class
Bio.SCOP.Residues.
Residues
(str=None)¶ Bases:
object
A collection of residues from a PDB structure.
This class provides code to work with SCOP domain definitions. These are concisely expressed as one or more chain fragments. For example, “(1bba A:10-20,B:)” indicates residue 10 through 20 (inclusive) of chain A, and every residue of chain B in the pdb structure 1bba. The pdb id and brackets are optional. In addition “-” indicates every residue of a pbd structure with one unnamed chain.
Start and end residue ids consist of the residue sequence number and an optional single letter insertion code. e.g. “12”, “-1”, “1a”, “1000”
pdbid – An optional PDB id, e.g. “1bba”
fragments – A sequence of tuples (chainID, startResID, endResID)
-
__init__
(self, str=None)¶ Initialize the class.
-
__str__
(self)¶ Represent the SCOP residues record as a string.
-