Bio.Phylo.NeXML module¶
Classes corresponding to NeXML trees.
See classes in Bio.Nexus
: Trees.Tree, Trees.NodeData, and Nodes.Chain.
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class
Bio.Phylo.NeXML.
Tree
(root=None, rooted=False, id=None, name=None, weight=1.0)¶ Bases:
Bio.Phylo.BaseTree.Tree
NeXML Tree object.
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__init__
(self, root=None, rooted=False, id=None, name=None, weight=1.0)¶ Instantiate a NeXML tree object with the given parameters.
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class
Bio.Phylo.NeXML.
Clade
(branch_length=1.0, name=None, clades=None, confidence=None, comment=None, **kwargs)¶ Bases:
Bio.Phylo.BaseTree.Clade
NeXML Clade (sub-tree) object.
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__init__
(self, branch_length=1.0, name=None, clades=None, confidence=None, comment=None, **kwargs)¶ Initialize parameters for NeXML Clade object.
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